1M2T

Mistletoe Lectin I from Viscum album in Complex with Adenine Monophosphate. Crystal Structure at 1.9 A Resolution

Structural Biology Knowledgebase: 1M2T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1M2T

Classification: RIBOSOME INHIBITOR HYDROLASE

Total Structure Weight: 58916.84

Macromolecule Entities
Molecule Chains Length Organism Details
mistletoe lectin I A chain A 254 Viscum album EC#: 3.2.2.22 IUBMB
Mutation: V8T, T9D, H10Q, E15A, R19S, L23V, E36N, I45V, D49E, A50G, Q61A, Q63G, S65T, V66I, A75L, Q81E, D84N, R90S, R94A, H99Q, L100D, T102S, R106S, L109Q, S148Q, R150K, Y176A, R219A, P223A, N226V, F227I, V233I
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
mistletoe lectin I B chain B 263 Viscum album Mutation: D249A, S253T, T258I, R268T, R301K, D342G, V390T, N403A, W408Y, D413T, S414A, S415G, K417E, ΔG173, K420R, N434L, D436S, S441N, V446I, A459S, ΔS215, K489S, R491Q, K501N, F510P
Gene Name(s):

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A, B ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADE
Query on ADE

A ADENINE
C5 H5 N5
GFFGJBXGBJISGV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.89 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.210
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.12 α = 90.00
b = 107.12 β = 90.00
c = 309.82 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-06-25
  • Released Date: 2003-06-24
  • Deposition author(s): Krauspenhaar, R., Rypniewski, W., Kalkura, N., Moore, K., DeLucas, L., Stoeva, S., Mikhailov, A., Voelter, W., Betzel, C.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4