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LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA
DOI:10.2210/pdb1m19/pdb   NDB ID: PD0329
1M19
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Structural Protein/dna
    Structure Weight: 200208.56
    Molecule: Palindromic 146 Base Pair DNA Fragment
    Polymer: 1 Type: dna Length: 146
    Chains: I, J
    Molecule: Histone H3.2
    Polymer: 2 Type: protein Length: 135
    Chains: A, E
    Organism Xenopus laevis
    Gene Name h3f3c
    UniProtKB:   Protein Feature View | Search PDB | P02302  
    Molecule: Histone H4
    Polymer: 3 Type: protein Length: 102
    Chains: B, F
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P62799  
    Molecule: Histone H2A.1
    Polymer: 4 Type: protein Length: 129
    Chains: C, G
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P06897  
    Molecule: Histone H2B.1
    Polymer: 5 Type: protein Length: 125
    Chains: D, H
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P02281  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1AOI  Original nucleosome core particle structure. 
    1M18  Nucleosome core particle structure with related ligand, Polyamide 1 bound. 
    1M1A  Nucleosome core particle structure with related ligand, Polyamide 3 bound. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ABU
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    ABU C4 H9 N O2
    GAMMA-AMINO-BUTANOIC ACID
    BAL
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    BAL C3 H7 N O2
    BETA-ALANINE
    DIB
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    DIB C5 H14 N2
    3-AMINO-(DIMETHYLPROPYLAMINE)
    IMT
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    IMT C5 H7 N3 O2
    4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID
    IMT:1M19
    MN
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    MN Mn
    MANGANESE (II) ION
    PYB
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    PYB C6 H8 N2 O2
    4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID
    PYB:1M19
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0329
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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