CRYSTAL STRUCTURE OF T215Y MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE DOI:10.2210/pdb1lw0/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 116575.74 Molecule: HIV-1 REVERSE TRANSCRIPTASE Polymer: 1 Type: protein Length: 560 Chains: A EC#: 2.7.7.49    2.7.7.7    3.1.26.13    Fragment: p66 Mutation: T215Y Organism Human immunodeficiency virus 1 Gene Name gag-pol UniProtKB:   Protein Feature View | Search PDB | P04585     Molecule: HIV-1 REVERSE TRANSCRIPTASE Polymer: 2 Type: protein Length: 440 Chains: B EC#: 2.7.7.49    2.7.7.7    3.1.26.13    Fragment: p51 Mutation: T215Y Organism Human immunodeficiency virus 1 Gene Name gag-pol UniProtKB:   Protein Feature View | Search PDB | P04585       Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli   Polymer: 2 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1C0T  1C0T contains the same protein COMPLEXED WITH BM+21.1326  1C0U  1C0U contains the same protein COMPLEXED WITH BM+50.0934  1C1B  1C1B contains the same protein COMPLEXED WITH GCA-186  1C1C  1C1C contains the same protein COMPLEXED WITH TNK-6123  1DTQ  1DTQ contains the same protein COMPLEXED WITH PETT-1  1DTT  1DTT contains the same protein COMPLEXED WITH PETT-2  1EP4  1EP4 contains the same protein COMPLEXED WITH S-1153  1FK9  1FK9 contains the same protein COMPLEXED WITH DMP-226 (EFAVIRENZ)  1FKO  1FKO contains K103N MUTANT HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ)  1FKP  1FKP contains K103N MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1JKH  1JKH contains Y181C MUTANT HIV-1 RT COMPLEXED WITH DMP-226 (EFAVIRENZ)  1JLA  1JLA contains Y181C MUTANT HIV-1 RT COMPLEXED TNK-651  1JLB  1JLB contains Y181C MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1JLC  1JLC contains Y181C MUTANT HIV-1 RT COMPLEXED WITH PETT-2  1JLE  1JLE contains Y188C MUTANT HIV-1 RT  1JLF  1JLF contains Y188C MUTANT HIV-1 RT COMPLEXED WITH NEVIRAPINE  1JLG  1JLG contains Y188C MUTANT HIV-1 RT COMPLEXED WITH UC-781  1JLQ  1JLQ contains the same protein COMPLEXED WITH 739W94  1KLM  1KLM contains the same protein COMPLEXED WITH BHAP (U-90152)  1LWC  1LWC contains M184V MUTANT HIV-1 REVERSE TRANSCRIPTAS IN COMPLEX WITH NEVIRAPINE  1LWE  1LWE contains M41L/T215Y MUTANT HIV-1 REVERSE TRANSCR (RTMN) IN COMPLEX WITH NEVIRAPINE  1LWF  1LWF contains MUTANT HIV-1 REVERSE TRANSCRIPTASE (RTMQ+M184V: M41L/D67N/K70R/M184V/T215Y) IN COMPLEX WITH NEVIRAPINE  1REV  1REV contains the same protein COMPLEXED WITH 9-CL-TIBO  1RT1  1RT1 contains the same protein COMPLEXED WITH MKC-442  1RT2  1RT2 contains the same protein COMPLEXED WITH TNK-651  1RT3  1RT3 contains AZT DRUG RESISTANT HIV-1 RT MUTANT (RTMC) COMPLEXED WITH 1051U91  1RT4  1RT4 contains the same protein COMPLEXED WITH UC-781  1RT5  1RT5 contains the same protein COMPLEXED WITH UC-10  1RT6  1RT6 contains the same protein COMPLEXED WITH UC-38  1RT7  1RT7 contains the same protein COMPLEXED WITH UC-84  1RTH  1RTH contains the same protein COMPLEXED WITH 1051U91  1RTI  1RTI contains the same protein COMPLEXED WITH HEPT  1RTJ  1RTJ contains the same protein  1VRT  1VRT contains the same protein COMPLEXED WITH NEVIRAPINE  1VRU  1VRU contains the same protein COMPLEXED WITH ALPHA-APA      Ligand Chemical Component Hide Identifier Formula Name Interactions NVP Search  Download  C15 H14 N4 O 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2- B:2',3'-E][1,4]DIAZEPIN-6-ONE   Ligand Explorer PO4 Search  Download  O4 P PHOSPHATE ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) NVP Search  Download  EC50: 20 - 380 nM (99) - data from BindingDB   IC50: 2.6 - 23000 nM (98 - 99) - data from BindingDB   Ki: 400 - 36000 nM (99) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     Modified Residues Hide Identifier Formula Parent Type CSD Search  C3 H7 N O4 S CYS lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 3 Domains - data from SCOP   CATH Classification v3.4.0: 9 Domains - data from CATH   Pfam Classification: 7 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Ren, J.,  Chamberlain, P.P.,  Nichols, C.E.,  Douglas, L.,  Stuart, D.I.,  Stammers, D.K. Deposition:   2002-05-30 Release:   2002-10-30 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.80 R-Value: 0.219 (work) R-Free: 0.301 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 139.70 α = 90.00  b = 115.00 β = 90.00  c = 65.60 γ = 90.00      Molecule of the Month Hide Reverse Transcriptase