1LVK

X-RAY CRYSTAL STRUCTURE OF THE MG (DOT) 2'(3')-O-(N-METHYLANTHRANILOYL) NUCLEOTIDE BOUND TO DICTYOSTELIUM DISCOIDEUM MYOSIN MOTOR DOMAIN

Structural Biology Knowledgebase: 1LVK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.200

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1LVK

Classification: CONTRACTILE PROTEIN

Total Structure Weight: 87388.46

Macromolecule Entities
Molecule Chains Length Organism Details
MYOSIN A 762 Dictyostelium discoideum Fragment: MOTOR DOMAIN
Mutation: V65S, E273T, T274S, Y312C, S321E, E322D, Q443S, L489V, E493K, I628L, L707D, Y737F
Details: GENETICALLY TRUNCATED HEAD OF MYOSIN FROM DICTYOSTELIUM
Gene Name(s): mhcA DDB_G0286355

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MNT
Query on MNT

A 2'(3')-O-N-METHYLANTHRANILOYL-ADENOSINE-5'- DIPHOSPHATE
MANT-ADP (Synonym)
C18 H22 N6 O10 P2
QPKUEBLEGWBRHC-BFHYXJOUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BEF
Query on BEF

A BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Observed: 0.200
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 103.90 α = 90.00
b = 179.90 β = 90.00
c = 53.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-09-05
  • Released Date: 1998-01-28
  • Deposition author(s): Bauer, C.B., Kuhlman, P.A., Bagshaw, C.R., Rayment, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4