POP-OUT | CLOSE
 
The kB DNA sequence from the HLV-LTR functions as an allosteric regulator of HIV transcription
DOI:10.2210/pdb1lei/pdb   NDB ID: PD0310
1LEI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 77033.24
    Molecule: 5'-D(*CP*TP*CP*AP*GP*GP*GP*AP*AP*AP*GP*TP*AP*CP*AP*GP*A)-3'
    Polymer: 1 Type: dna Length: 17
    Chains: C
    Details: kB DNA
    Molecule: 5'-D(*TP*CP*TP*GP*5ITP*AP*CP*5ITP*5ITP*5ITP*CP*CP*CP*TP*GP*AP*G)-3'
    Polymer: 2 Type: dna Length: 17
    Chains: D
    Details: kB DNA
    Molecule: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT
    Polymer: 3 Type: protein Length: 274
    Chains: A
    Fragment: p65 RHR
    Organism: Mus musculus
    Gene Names: Rela Nfkb3
    UniProtKB: Protein Feature View | Search PDB | Q04207  
    Molecule: NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT
    Polymer: 4 Type: protein Length: 313
    Chains: B
    Fragment: p50 RHR
    Organism: Mus musculus
    Gene Name: Nfkb1
    UniProtKB: Protein Feature View | Search PDB | P25799  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli bl21(de3)  
    Polymer: 4
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1VKX  1VKX contains the same protein complexed with a kB DNA 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5IU
    Search 
    5IU C9 H12 I N2 O8 P DU dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0310
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Chen-Park, F.,  Huang, D.B.,  Ghosh, G.

    Deposition:   2002-04-09
    Release:   2003-04-15
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.70
    R-Value: 0.250 (work)
    R-Free: 0.284
    Space Group: C 2 2 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 137.13 α = 90.00 
    b = 179.70 β = 90.00 
    c = 97.07 γ = 90.00