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Crystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB siti
DOI:10.2210/pdb1le9/pdb   NDB ID: PD0309
1LE9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 146993.54
    Molecule: 5'-D(*TP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*T)-3'
    Polymer: 1 Type: dna Length: 12
    Chains: C, G
    Details: Ig/HIV2-kB DNA
    Molecule: 5'-D(*AP*AP*GP*GP*AP*AP*AP*GP*TP*CP*CP*C)-3'
    Polymer: 2 Type: dna Length: 12
    Chains: D, H
    Details: Ig/HIV2-kB DNA
    Molecule: NUCLEAR FACTOR NF-KAPPA-B P65 SUBUNIT
    Polymer: 3 Type: protein Length: 274
    Chains: A, E
    Fragment: p65 RHR
    Organism Mus musculus
    Gene Names Rela Nfkb3
    UniProtKB:   Protein Feature View | Search PDB | Q04207  
    Molecule: NUCLEAR FACTOR NF-KAPPA-B P50 SUBUNIT
    Polymer: 4 Type: protein Length: 313
    Chains: B, F
    Fragment: p50 RHR
    Organism Mus musculus
    Gene Name Nfkb1
    UniProtKB:   Protein Feature View | Search PDB | P25799  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli bl21(de3)  
    Polymer: 4
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1LE5  CRYSTAL STRUCTURE OF A NF-KB HETERODIMER BOUND TO AN IFNB-KB 
    1LEI  The kB DNA sequence from the HIV-LTR functions as an allosteric regulator of HIV transcription 
    1VKX  1VKX contains the same protein and Ig-kB DNA 
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0309
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Benjamin, B.,  Huang, D.B.,  Chen-Park, F.E.,  Sigler, P.B.,  Ghosh, G.

    Deposition:   2002-04-09
    Release:   2003-04-15
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.00
    R-Value: 0.249 (work)
    R-Free: 0.305
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 137.84 α = 90.00 
    b = 138.00 β = 97.28 
    c = 90.04 γ = 90.00