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LIGAND BINDING DOMAIN OF THE HUMAN PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA IN COMPLEX WITH A SYNTHETIC AGONIST
1KNU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: DNA Binding Protein
    Structure Weight: 63046.88
    Molecule: PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA
    Polymer: 1 Type: protein Length: 274
    Chains: A, B
    Fragment: LIGAND BINDING DOMAIN
    Organism: Homo sapiens
    Gene Names: Gene View for PPARG NR1C3
    UniProtKB: Protein Feature View | Search PDB | P37231  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21(de3)  
     
  •   Related PDB Entries Hide
    Identifier Details
    1PRG  1PRG contains the same protein. 
    2PRG  2PRG contains the same protein complexed with BRL49653. 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    YPA
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    YPA C25 H25 N O4
    (S)-3-(4-(2-CARBAZOL-9-YL-ETHOXY)-PHENYL)- 2-ETHOXY-PROPIONIC ACID
    YPA:1KNU
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    YPA
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    YPA
    EC50: 170 nM (100) - data from BindingDB  
    Kd: 170 nM (100) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Svensson, L.A.,  Mortensen, S.B.,  Fleckner, J.,  Woeldike, H.F.

    Deposition:   2001-12-19
    Release:   2002-12-19
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.224 (work)
    R-Free: 0.264
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 92.27 α = 90.00 
    b = 63.44 β = 101.84 
    c = 119.24 γ = 90.00