1KI6

CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE I COMPLEXED WITH A 5-IODOURACIL ANHYDROHEXITOL NUCLEOSIDE

Structural Biology Knowledgebase: 1KI6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.317
  • R-Value Work: 0.223

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1KI6

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 72461.07

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE KINASE A 331 Human herpesvirus 1 EC#: 2.7.1.21 IUBMB
Mutation: P280A
Gene Name(s): TK UL23
THYMIDINE KINASE B 331 Human herpesvirus 1 EC#: 2.7.1.21 IUBMB
Gene Name(s): TK UL23

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AHU
Query on AHU

A, B 1',5'-ANHYDRO-2',3'-DIDEOXY-2'-(5-IODOURACIL- 1-YL)-D-ABABINO-HEXITOL
C10 H13 I N2 O5
PJDQVZSBWDEYOF-APQOSEDMSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.317
  • R-Value Work: 0.223
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.60 α = 90.00
b = 116.40 β = 90.00
c = 108.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-05-18
  • Released Date: 1998-12-02
  • Deposition author(s): Champness, J.N., Bennett, M.S., Wien, F., Herdewijn, P., Ostrowski, T., Summers, W.C., Sanderson, M.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4