1KEG

Antibody 64M-2 Fab complexed with dTT(6-4)TT

Structural Biology Knowledgebase: 1KEG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1KEG

Classification: IMMUNE SYSTEM / DNA

Total Structure Weight: 48690.74


Macromolecule Entities
Molecule Chains Length Organism Details
Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain) L 216 Mus musculus
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain) H 220 Mus musculus
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*(64T)P*TP*T)-3' A 4 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

L NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
64T
Query on 64T
A DNA LINKING C10 H17 N2 O9 P DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.201
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.57 α = 90.00
b = 137.27 β = 90.00
c = 49.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-15
  • Released Date: 2002-11-15
  • Deposition author(s): Yokoyama, H., Mizutani, R., Satow, Y., Sato, K., Komatsu, Y., Ohtsuka, E., Nikaido, O.

Revision History

  • 2012-03-28
    Type: Citation | Details: Citation update
  • 2012-02-29
    Type: Citation | Details: Citation update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4