1JVD

CRYSTAL STRUCTURE OF HUMAN AGX2 COMPLEXED WITH UDPGLCNAC

Structural Biology Knowledgebase: 1JVD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JVD

Classification: TRANSFERASE

Total Structure Weight: 118893.66

Macromolecule Entities
Molecule Chains Length Organism Details
UDPGLCNAC PYROPHOSPHORYLASE (AGX2) A, B 522 Homo sapiens EC#: 2.7.7.23 IUBMB
Mutation: S445G, Q454S
Gene Name(s): UAP1 Gene View SPAG2

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UD1
Query on UD1

A, B URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
C17 H27 N3 O17 P2
LFTYTUAZOPRMMI-CFRASDGPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.193
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.54 α = 90.00
b = 71.28 β = 92.82
c = 91.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-29
  • Released Date: 2002-08-29
  • Deposition author(s): Peneff, C., Bourne, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4