1JT1

FEZ-1 metallo-beta-lactamase from Legionella gormanii modelled with D-captopril

Structural Biology Knowledgebase: 1JT1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.161

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JT1

Classification: HYDROLASE

Total Structure Weight: 30176.49

Macromolecule Entities
Molecule Chains Length Organism Details
FEZ-1, class B3 metallo-beta-lactamase A 263 Fluoribacter gormanii EC#: 3.5.2.6 IUBMB
Fragment: RESIDUES 20-282
Mutation: Q277S, A311G
Gene Name(s): blaFEZ-1

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MCO
Query on MCO

A 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE- 2-CARBOXYLIC ACID
C9 H15 N O3 S
FAKRSMQSSFJEIM-RNFRBKRXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MCO N/A in BindingDB
Kd: 400000 nM  BindingMOAD
Ki: 400000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.161
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 82.12 α = 90.00
b = 76.78 β = 110.21
c = 44.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-20
  • Released Date: 2003-01-21
  • Deposition author(s): Garcia-Saez, I., Mercuri, P.S., Kahn, R., Papamicael, C., Frere, J.M., Galleni, M., Dideberg, O.

Revision History

  • 2013-05-08
    Type: Advisory | Details: add caveat
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update