1JIZ

Crystal Structure Analysis of human Macrophage Elastase MMP-12

Structural Biology Knowledgebase: 1JIZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1JIZ

Classification: HYDROLASE

Total Structure Weight: 38104.31

Macromolecule Entities
Molecule Chains Length Organism Details
macrophage elastase MMP-12 A, B 166 Homo sapiens EC#: 3.4.24.65 IUBMB
Fragment: catalytic domain
Gene Name(s): MMP12 Gene View HME

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CGS
Query on CGS

A, B N-HYDROXY-2(R)-[[(4-METHOXYPHENYL)SULFONYL](3- PICOLYL)AMINO]-3-METHYLBUTANAMIDE HYDROCHLORIDE
CGS-27023A (Synonym)
C18 H23 N3 O5 S
BSIZUMJRKYHEBR-QGZVFWFLSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CGS N/A in BindingDB
N/A in BindingMoad
IC50: 2.0 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.197
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.40 α = 90.00
b = 87.20 β = 90.00
c = 169.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-03
  • Released Date: 2002-07-03
  • Deposition author(s): Nar, H., Werle, K., Bauer, M.M.T., Dollinger, H., Jung, B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4