RCSB Protein Data Bank - RCSB PDB - 1J5Q Structure Summary

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The Structure and Evolution of the Major Capsid Protein of a Large, Lipid-containing, DNA virus.

DOI:10.2210/pdb1j5q/pdb

1J5Q

FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)

FASTA Sequence
PDB File (Text)
PDB File (gz)
mmCIF File
mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)

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Primary Citation

Molecular Description

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Source

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Polymer: 1

Scientific Name:

Related PDB Entries

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Identifier	Details
1M3Y	The same protein in different space group
1M4X	The same protein studies by Cryo-electron microscopy

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
HG Search Download	Hg	MERCURY (II) ION		Ligand Explorer
MAN Search Download	C₆ H₁₂ O₆	ALPHA-D-MANNOSE		Ligand Explorer
NAG Search Download	C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer
NDG Search Download	C₈ H₁₅ N O₆	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE		Ligand Explorer

External Domain Annotations Hide
SCOP Classification v1.75: 4 Domains - data from SCOP

CATH Classification v3.4.0: 4 Domains - data from CATH

Pfam Classification: 1 Domain - data from Pfam

GO Terms: 3 Terms - data from GO
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

Biological Assembly 1

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Biological assembly 1 assigned by authors

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Deposition Summary

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Authors: Nandhagopal, N., Simpson, A.A., Gurnon, J.R., Yan, X., Baker, T.S., Graves, M.V., Van Etten, J.L., Rossmann, M.G.

Revision History Hide

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2011-07-13
Biological assembly

2011-07-13
Version format compliance

Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS