1IYP

Toho-1 beta-Lactamase In Complex With Cephalothin

Structural Biology Knowledgebase: 1IYP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IYP

Classification: HYDROLASE

Total Structure Weight: 28890.75

Macromolecule Entities
Molecule Chains Length Organism Details
Toho-1 beta-lactamase A 262 Escherichia coli EC#: 3.5.2.6 IUBMB
Mutation: E166A
Gene Name(s): bla

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CEP
Query on CEP

A CEPHALOTHIN GROUP
C16 H18 N2 O6 S2
UUWFGEKEQSCSMB-IAQYHMDHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.199
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.23 α = 90.00
b = 73.23 β = 90.00
c = 100.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-04
  • Released Date: 2002-12-11
  • Deposition author(s): Shimamura, T., Ibuka, A., Fushinobu, S., Wakagi, T., Ishiguro, M., Ishii, Y., Matsuzawa, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4