1IVO

Crystal Structure of the Complex of Human Epidermal Growth Factor and Receptor Extracellular Domains.

Structural Biology Knowledgebase: 1IVO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.326
  • R-Value Work: 0.255

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IVO

Classification: TRANSFERASE / SIGNALING PROTEIN

Total Structure Weight: 152213.78

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal Growth Factor Receptor A, B 622 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: extracellular domains I, II, II and IV
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1
Epidermal growth factor C, D 53 Homo sapiens Fragment: RESIDUES 1-53
Gene Name(s): EGF Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.326
  • R-Value Work: 0.255
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 220.16 α = 90.00
b = 220.16 β = 90.00
c = 113.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-28
  • Released Date: 2002-10-16
  • Deposition author(s): Ogiso, H., Ishitani, R., Nureki, O., Fukai, S., Yamanaka, M., Kim, J.H., Saito, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4