1IMV

2.85 A crystal structure of PEDF

Structural Biology Knowledgebase: 1IMV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IMV

Classification: SIGNALING PROTEIN

Total Structure Weight: 44550.21

Macromolecule Entities
Molecule Chains Length Organism Details
PIGMENT EPITHELIUM-DERIVED FACTOR A 398 Homo sapiens Gene Name(s): SERPINF1 Gene View PEDF PIG35

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.188
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 176.17 α = 90.00
b = 62.51 β = 90.00
c = 45.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-11
  • Released Date: 2001-09-26
  • Deposition author(s): Simonovic, M., Gettins, P.G.W., Volz, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update