1IE7

PHOSPHATE INHIBITED BACILLUS PASTEURII UREASE CRYSTAL STRUCTURE

Structural Biology Knowledgebase: 1IE7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.170

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1IE7

Classification: HYDROLASE

Total Structure Weight: 87026.45

Macromolecule Entities
Molecule Chains Length Organism Details
UREASE GAMMA SUBUNIT A 100 Sporosarcina pasteurii EC#: 3.5.1.5 IUBMB
Mutation: M1X
Gene Name(s): ureA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UREASE BETA SUBUNIT B 126 Sporosarcina pasteurii EC#: 3.5.1.5 IUBMB
Gene Name(s): ureB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UREASE ALPHA SUBUNIT C 570 Sporosarcina pasteurii EC#: 3.5.1.5 IUBMB
Mutation: R19E, G29I, Y36T, Y37T, L38Y, K220X, V263L, Q327N, M420I
Gene Name(s): ureC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

C PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

C NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CXM
Query on CXM
A L-PEPTIDE LINKING C6 H11 N O4 S MET
KCX
Query on KCX
C L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.170
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 131.49 α = 90.00
b = 131.49 β = 90.00
c = 189.49 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-09
  • Released Date: 2001-04-25
  • Deposition author(s): Benini, S., Rypniewski, W.R., Wilson, K.S., Ciurli, S., Mangani, S.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4