1I7G

CRYSTAL STRUCTURE OF THE LIGAND BINDING DOMAIN FROM HUMAN PPAR-ALPHA IN COMPLEX WITH THE AGONIST AZ 242

Structural Biology Knowledgebase: 1I7G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1I7G

Classification: TRANSCRIPTION

Total Structure Weight: 33631.12

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR ALPHA A 287 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Gene Name(s): PPARA Gene View NR1C1 PPAR

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AZ2
Query on AZ2

A (2S)-2-ETHOXY-3-[4-(2-{4-[(METHYLSULFONYL)OXY]PHENYL}ETHOXY)PHENYL]PROPANOIC ACID
AZ 242 (Synonym)
C20 H24 O7 S
CXGTZJYQWSUFET-IBGZPJMESA-N
Ligand Explorer
 
JSmol
CPQ
Query on CPQ

A N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE
DEOXY-BIGCHAP (Synonym)
C42 H75 N3 O15
OJSUWTDDXLCUFR-HGZMBBKESA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AZ2 EC50: 37 - 3124 nM (100) BindingDB
IC50: 3800 nM (100) BindingDB
Ki: 1000 nM (100) BindingDB

IC50: 1000 nM  BindingMOAD
IC50: 1000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.237
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 76.97 α = 90.00
b = 76.97 β = 90.00
c = 100.59 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-03-09
  • Released Date: 2002-03-09
  • Deposition author(s): Petersen, J.F.W., Cronet, P., Folmer, R., Blomberg, N., Sjoblom, K., Karlsson, U., Lindstedt, E.-L., Bamberg, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4