1HTY

GOLGI ALPHA-MANNOSIDASE II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1HTY

Classification: HYDROLASE

Total Structure Weight: 117969.02

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-MANNOSIDASE II A 1015 Drosophila melanogaster EC#: 3.2.1.114 IUBMB
Mutation: M45M, M52M, M124M, M149M, M167M, M193M, M212M, M263M, M264M, M290M, M428M, M433M, M441M, M490M, M499M, M501M, M557M, M627M, M769M, M792M, M835M, M865M, M962M, M985M, M1026M, M1034M
Gene Name(s): alpha-Man-II GmII CG18802
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TRS N/A in BindingDB
N/A in BindingMoad
IC50: 40000000 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.193
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 68.86 α = 90.00
b = 109.72 β = 90.00
c = 138.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-02
  • Released Date: 2002-01-02
  • Deposition author(s): van den Elsen, J.M.H., Kuntz, D.A., Rose, D.R.

Revision History

  • Version 1_0: 2002-01-02

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance