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STRUCTURE OF BOVINE RHODOPSIN IN A TRIGONAL CRYSTAL FORM
 
 
DOI:10.2210/pdb1gzm/pdb
1GZM
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Signaling Protein
    Structure Weight: 87936.59
     
    Molecule:RHODOPSIN
    Polymer:1Type:polypeptide(L)Length:349
    Chains:A, B
    Other Details:DISULFIDE LINK BETWEEN A110 AND A187, AND B110 AND B187
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Bos taurus Go to NCBI Taxonomy entry Common Name: Bovine  
    Polymer: 4
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    1BOJ  BOVINE RHODOPSIN (7-HELIX BUNDLE) WITH ALL- TRANS RETINAL, METARHODOPSIN II MODEL, THEORETICAL MODEL 
    1BOK  BOVINE RHODOPSIN (7-HELIX BUNDLE) WITH 11- CIS RETINAL, THEORETICAL MODEL 
    1EDS  SOLUTION STRUCTURE OF INTRADISKAL LOOP 1 OF BOVINE RHODOPSIN (RHODOPSIN RESIDUES 92-123) 
    1EDV  SOLUTION STRUCTURE OF 2ND INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 172-205) 
    1EDW  SOLUTION STRUCTURE OF THIRD INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 268-293) 
    1EDX  SOLUTION STRUCTURE OF AMINO TERMINUS OF BOVINE RHODOPSIN (RESIDUES 1- 40) 
    1F88  CRYSTAL STRUCTURE OF BOVINE RHODOPSIN 
    1FDF  HELIX 7 BOVINE RHODOPSIN 
    1HZX  CRYSTAL STRUCTURE OF BOVINE RHODOPSIN 
    1JFP  STRUCTURE OF BOVINE RHODOPSIN (DARK ADAPTED) 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    BMA     BETA-D-MANNOSE C6 H12 O6 3DLigand Explorer Link out to Ligand Expos:BMA Link out to SuperLigands:BMA Link out to SuperHapten:BMA
    C8E     (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE C16 H34 O5 3DLigand Explorer Link out to Ligand Expos:C8E Link out to SuperLigands:C8E Link out to SuperHapten:C8E
    LDA     LAURYL DIMETHYLAMINE-N-OXIDE C14 H31 N O 3DLigand Explorer Link out to Ligand Expos:LDA Link out to SuperLigands:LDA Link out to SuperHapten:LDA
    NAG     N-ACETYL-D-GLUCOSAMINE C8 H15 N O6 3DLigand Explorer Link out to Ligand Expos:NAG Link out to SuperLigands:NAG Link out to SuperHapten:NAG
    PEF     DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE C37 H74 N O8 P 3DLigand Explorer Link out to Ligand Expos:PEF Link out to SuperLigands:PEF Link out to SuperHapten:PEF
    PLM     PALMITIC ACID C16 H32 O2 3DLigand Explorer Link out to Ligand Expos:PLM Link out to SuperLigands:PLM Link out to SuperHapten:PLM
    RET     RETINAL C20 H28 O 3DLigand Explorer Link out to Ligand Expos:RET Link out to SuperLigands:RET Link out to SuperHapten:RET
    ZN     ZINC ION Zn 3DLigand Explorer Link out to Ligand Expos:ZN Link out to SuperLigands:ZN Link out to SuperHapten:ZN
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    ACE ACETYL GROUP(type: nonPolymer) C2 H4 O 3D Ligand Explorer Link out to Ligand Expos:ACE Link out to SuperLigands:ACE Link out to SuperHapten:ACE 2D
     
     
  •  
    Move Section Derived Data Hide
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Li, J.

    Deposition:   2002-05-24
    Release:   2003-11-20
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.65
    R-Value: 0.201 (obs.)
    R-Free: 0.235
    Space Group: P 31
    Unit Cell:
      Length [Å] Angles [°]
    a = 103.82 α = 90.00 
    b = 103.82 β = 90.00 
    c = 76.59 γ = 120.00