STRUCTURE OF BOVINE RHODOPSIN IN A TRIGONAL CRYSTAL FORM DOI:10.2210/pdb1gzm/pdb

1GZM   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Signaling Protein Structure Weight: 87936.59 Molecule: RHODOPSIN Polymer: 1 Type: protein Length: 349 Chains: A, B Details: DISULFIDE LINK BETWEEN A110 AND A187, AND B110 AND B187 Organism Bos taurus Gene Name RHO UniProtKB:   Protein Feature View | Search PDB | P02699         Source Hide Polymer: 1 Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1BOJ  BOVINE RHODOPSIN (7-HELIX BUNDLE) WITH ALL- TRANS RETINAL, METARHODOPSIN II MODEL, THEORETICAL MODEL  1BOK  BOVINE RHODOPSIN (7-HELIX BUNDLE) WITH 11- CIS RETINAL, THEORETICAL MODEL  1EDS  SOLUTION STRUCTURE OF INTRADISKAL LOOP 1 OF BOVINE RHODOPSIN (RHODOPSIN RESIDUES 92-123)  1EDV  SOLUTION STRUCTURE OF 2ND INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 172-205)  1EDW  SOLUTION STRUCTURE OF THIRD INTRADISKAL LOOP OF BOVINE RHODOPSIN (RESIDUES 268-293)  1EDX  SOLUTION STRUCTURE OF AMINO TERMINUS OF BOVINE RHODOPSIN (RESIDUES 1- 40)  1F88  CRYSTAL STRUCTURE OF BOVINE RHODOPSIN  1FDF  HELIX 7 BOVINE RHODOPSIN  1HZX  CRYSTAL STRUCTURE OF BOVINE RHODOPSIN  1JFP  STRUCTURE OF BOVINE RHODOPSIN (DARK ADAPTED)      Ligand Chemical Component Hide Identifier Formula Name Interactions BMA Search  Download  C6 H12 O6 BETA-D-MANNOSE   Ligand Explorer C8E Search  Download  C16 H34 O5 (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE   Ligand Explorer LDA Search  Download  C14 H31 N O LAURYL DIMETHYLAMINE-N-OXIDE   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer PEF Search  Download  C37 H74 N O8 P DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE   Ligand Explorer PLM Search  Download  C16 H32 O2 PALMITIC ACID   Ligand Explorer RET Search  Download  C20 H28 O RETINAL   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type ACE Search  C2 H4 O nonPolymer     External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 7 Domains - data from Pfam   GO Terms: 25 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Li, J. Deposition:   2002-05-24 Release:   2003-11-20 Last Modified (REVDAT):   2011-10-19     Revision History    Hide Mouse over text for details 2011-10-19 Non-polymer description 2011-10-19 Other 2011-10-19 Geometry validation 2011-10-19 Version format compliance 2011-10-19 Refinement description 2011-10-19 Biological assembly 2011-10-19 Linkage 2011-10-19 Binding sites and description     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.65 R-Value: 0.201 (obs.) R-Free: 0.235 Space Group: P 31 Unit Cell:   Length [Å] Angles [°] a = 103.82 α = 90.00  b = 103.82 β = 90.00  c = 76.59 γ = 120.00      Molecule of the Month Hide Adrenergic Receptors Rhodopsin Bacteriorhodopsin G Proteins Carotenoid Oxygenase