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Complex of vancomycin with DI-acetyl-LYS-D-ALA-D-ALA
1FVM
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Peptide/antibiotic
    Structure Weight: 11074.51
    Molecule: VANCOMYCIN
    Polymer: 1 Type: protein Length: 7
    Chains: A, B, C, D, E, F
    Organism Amycolatopsis orientalis
    Molecule: DI-ACETYL-LYS-D-ALA-D-ALA
    Polymer: 2 Type: protein Length: 3
    Chains: G, H, I, J, K, L
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (Amycolatopsis orientalis)   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1AA5  CRYSTAL STRUCTURE OF VANCOMYCIN 
    1C0Q  CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D-PROPANOIC ACID 
    1C0R  CRYSTAL STRUCTURE OF VANCOMYCIN WITH D-LACTIC ACID 
    1GAC  SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT 
    1GHG  CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON 
    1PN3  CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN 
    1PNV  CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN 
    1QD8  CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN 
    1RRV  CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN. 
    1SHO  CRYSTAL STRUCTURE OF VANCOMYCIN 
     
  •   Biologically Interesting Molecules (BIRD) Hide
    Identifier Image Name Type Class Chain ID  
    PRD_000204 Search  PRD_000204 VANCOMYCIN Glycopeptide Antibiotic A,B,C,D,E,F
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    BGC
    Search 
    Download      		BGC C6 H12 O6
    BETA-D-GLUCOSE
    RER
    Search 
    Download      		RER C7 H15 N O3
    (1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl- alpha-L-arabino-hexopyranose
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    MLU
    Search      		MLU C7 H15 N O2 dPeptideLinking
    OMZ
    Search      		OMZ C9 H10 Cl N O4 dPeptideLinking
    GHP
    Search      		GHP C8 H9 N O3 dPeptideLinking
    OMY
    Search      		OMY C9 H10 Cl N O4 TYR lPeptideLinking
    3FG
    Search      		3FG C8 H9 N O4 lPeptideLinking
    DLS
    Search      		DLS C10 H18 N2 O4 LYS lPeptideLinking
    DAL
    Search      		DAL C3 H7 N O2 dPeptideLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 generated by PISA 1.18 (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Nitanai, Y.,  Kakoi, K.,  Aoki, K.

    Deposition:   2000-09-20
    Release:   2000-11-01
    Last Modified (REVDAT):   2011-07-27
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Other
    2011-07-27
    Atom nomenclature
    2011-07-27
    Binding sites and description
    2011-07-27
    Non-polymer description
    2011-07-27
    Function and keywords
    2011-07-27
    Linkage
    2011-07-27
    Sequence database correspondence
    2011-07-27
    Polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   1.80
    R-Value: 0.144 (obs.)
    R-Free: n/a
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 35.64 α = 90.00 
    b = 36.42 β = 90.00 
    c = 65.73 γ = 90.00