STRUCTURE OF FUNCTIONALLY ACTIVATED SMALL RIBOSOMAL SUBUNIT AT 3.3 A RESOLUTION DOI:10.2210/pdb1fka/pdb   NDB ID: RR0017

1FKA   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 725015.90 Molecule: 16S RIBOSOMAL RNA Polymer: 1 Type: rna Length: 1518 Chains: A Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S2 Polymer: 2 Type: protein Length: 111 Chains: B Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S3 Polymer: 3 Type: protein Length: 176 Chains: C Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S4 Polymer: 4 Type: protein Length: 209 Chains: D Organism Thermus thermophilus Gene Names rpsD rps4 TTHA1665 UniProtKB:   Protein Feature View | Search PDB | P80373     Molecule: 30S RIBOSOMAL PROTEIN S5 Polymer: 5 Type: protein Length: 162 Chains: E Organism Thermus thermophilus Gene Names rpsE TTHA1675 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ5     Molecule: 30S RIBOSOMAL PROTEIN S6 Polymer: 6 Type: protein Length: 101 Chains: F Organism Thermus thermophilus Gene Names rpsF TTHA0245 UniProtKB:   Protein Feature View | Search PDB | Q5SLP8     Molecule: 30S RIBOSOMAL PROTEIN S7 Polymer: 7 Type: protein Length: 151 Chains: G Organism Thermus thermophilus Gene Names rpsG rps7 TTHA1696 UniProtKB:   Protein Feature View | Search PDB | P17291     Molecule: 30S RIBOSOMAL PROTEIN S8 Polymer: 8 Type: protein Length: 138 Chains: H Organism Thermus thermophilus Gene Names rpsH TTHA1678 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2     Molecule: 30S RIBOSOMAL PROTEIN S9 Polymer: 9 Type: protein Length: 89 Chains: I Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S10 Polymer: 10 Type: protein Length: 71 Chains: J Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S11 Polymer: 11 Type: protein Length: 70 Chains: K Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S12 Polymer: 12 Type: protein Length: 103 Chains: L Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S13 Polymer: 13 Type: protein Length: 77 Chains: M Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S14 Polymer: 14 Type: protein Length: 26 Chains: N Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S15 Polymer: 15 Type: protein Length: 89 Chains: O Organism Thermus thermophilus Gene Names rpsO TTHA1138 UniProtKB:   Protein Feature View | Search PDB | Q5SJ76     Molecule: 30S RIBOSOMAL PROTEIN S16 Polymer: 16 Type: protein Length: 73 Chains: P Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S17 Polymer: 17 Type: protein Length: 84 Chains: Q Organism Thermus thermophilus Molecule: 30S RIBOSOMAL PROTEIN S18 Polymer: 18 Type: protein Length: 88 Chains: R Organism Thermus thermophilus Gene Names rpsR TTHA0243 UniProtKB:   Protein Feature View | Search PDB | Q5SLQ0     Molecule: 30S RIBOSOMAL PROTEIN S19 Polymer: 19 Type: protein Length: 93 Chains: S Organism Thermus thermophilus Gene Names rpsS TTHA1688 UniProtKB:   Protein Feature View | Search PDB | Q5SHP2     Molecule: 30S RIBOSOMAL PROTEIN S20 Polymer: 20 Type: protein Length: 95 Chains: T Organism Thermus thermophilus     Source Hide Polymer: 1 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 2 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 3 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 4 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 5 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 6 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 7 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 8 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 9 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 10 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 11 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 12 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 13 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 14 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 15 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 16 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 17 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 18 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 19 Scientific Name: Thermus thermophilus   Taxonomy     Polymer: 20 Scientific Name: Thermus thermophilus   Taxonomy         Related PDB Entries Hide Identifier Details 1A32  S15 ribosomal protein of Th.th.  1AN7  S8 ribosomal protein of Th.th.  1C05  S4 ribosomal protein of B.st.  1EKC  S6,S15,S18 ribosomal proteins of Th.th.  1PKP  S5 ribosomal protein of B.st.  1QKF  S19 ribosomal protein of Th.th.  1RIS  S6 ribosomal protein of Th.th.  1RSS  S7 ribosomal protein of Th.th.      Ligand Chemical Component Hide Identifier Formula Name Interactions WO2 Search  Download  O62 P2 W18 OCTADECATUNGSTENYL DIPHOSPHATE   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 19 Domains - data from SCOP   CATH Classification v3.4.0: 11 Domains - data from CATH   Pfam Classification: 10 Domains - data from Pfam   GO Terms: 60 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: RR0017     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Schluenzen, F.,  Tocilj, A.,  Zarivach, R.,  Harms, J.,  Gluehmann, M.,  Janell, D.,  Bashan, A.,  Bartels, H.,  Agmon, I.,  Franceschi, F.,  Yonath, A. Deposition:   2000-08-09 Release:   2000-09-04 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data: N/A Resolution[Å]:   3.30 R-Value: 0.304 (work) R-Free: 0.305 Space Group: P 41 21 2 Unit Cell:   Length [Å] Angles [°] a = 406.30 α = 90.00  b = 406.30 β = 90.00  c = 173.10 γ = 90.00      Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA