1FFK

CRYSTAL STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI AT 2.4 ANGSTROM RESOLUTION

Structural Biology Knowledgebase: 1FFK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.252

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FFK

Classification: ribosome

Total Structure Weight: 1404963.25


Macromolecule Entities
Molecule Chains Length Organism Details
RIBOSOMAL PROTEIN L2 A 239 Haloarcula marismortui Gene Name(s): rpl2 rrnAC1608
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L3 B 337 Haloarcula marismortui Mutation: ΔE67
Gene Name(s): rpl3 rrnAC1611
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L4 C 246 Haloarcula marismortui Mutation: Q73L
Gene Name(s): rpl4 rrnAC1610
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L5 D 176 Haloarcula marismortui Gene Name(s): rpl5 rrnAC1598
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L7AE E 119 Haloarcula marismortui Gene Name(s): rpl7ae rrnAC0103
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L10E F 157 Haloarcula marismortui Gene Name(s): rpl10e rrnAC2357
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L13 G 145 Haloarcula marismortui Gene Name(s): rpl13 rrnAC0065
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L14 H 132 Haloarcula marismortui Gene Name(s): rpl14 rrnAC1602
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L15E I 194 Haloarcula marismortui Gene Name(s): rpl15e rrnAC2065
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L15 J 164 Haloarcula marismortui Gene Name(s): rpl15 rrnAC1590
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L18 K 186 Haloarcula marismortui Gene Name(s): rpl18 rrnAC1593
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L18E L 115 Haloarcula marismortui Gene Name(s): rpl18e rrnAC0064
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L19 M 148 Haloarcula marismortui Mutation: Y71K
Gene Name(s): rpl19e rrnAC1594
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L21E N 95 Haloarcula marismortui Gene Name(s): rpl21e rrnAC0260
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L22 O 154 Haloarcula marismortui Gene Name(s): rpl22 rrnAC1606
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L23 P 84 Haloarcula marismortui Gene Name(s): rpl23p rrnAC1609
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L24 Q 119 Haloarcula marismortui Gene Name(s): rpl24p rrnAC1601
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L24E R 66 Haloarcula marismortui Gene Name(s): rpl24e rrnAC0104
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L29 S 70 Haloarcula marismortui Gene Name(s): rpl29p rrnAC1604
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L30 T 154 Haloarcula marismortui Gene Name(s): rpl30p rrnAC1591
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L31E U 91 Haloarcula marismortui Gene Name(s): rpl31e rrnAC3113
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L32E V 143 Haloarcula marismortui Mutation: A109N
Gene Name(s): rpl32e rrnAC1595
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L37AE W 73 Haloarcula marismortui
RIBOSOMAL PROTEIN L37E X 56 Haloarcula marismortui Gene Name(s): rpl37e rrnAC0797.1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L39E Y 49 Haloarcula marismortui Mutation: L11K, W24Y, Y42W
Gene Name(s): rpl39e rrnAC3112
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L44E Z 92 Haloarcula marismortui Gene Name(s): rpl44e rrnAC3514
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RIBOSOMAL PROTEIN L6 1 177 Haloarcula marismortui Gene Name(s): rpl6 rrnAC1596
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
23S RRNA 0 2922 Haloarcula marismortui
5S RRNA 9 122 Haloarcula marismortui

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

R, W, X, Z CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

0 POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

0 MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.252
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 211.66 α = 90.00
b = 299.67 β = 90.00
c = 573.77 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-07-25
  • Released Date: 2000-08-14
  • Deposition author(s): Ban, N., Nissen, P., Hansen, J., Moore, P.B., Steitz, T.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4