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2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z
DOI:10.2210/pdb1f66/pdb   NDB ID: PD0171
1F66
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Structural Protein/dna
    Structure Weight: 199860.67
    Molecule: PALINDROMIC 146 BASE PAIR DNA FRAGMENT
    Polymer: 1 Type: dna Length: 146
    Chains: I, J
    Molecule: HISTONE H3
    Polymer: 2 Type: protein Length: 136
    Chains: A, E
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P84233  
    Molecule: HISTONE H4
    Polymer: 3 Type: protein Length: 103
    Chains: B, F
    Organism Mus musculus
    Gene Names Hist1h4a Hist1h4b H4-53 Hist1h4c H4-12 Hist1h4d Hist1h4f Hist1h4h Hist1h4i Hist1h4j Hist1h4k Hist1h4m Hist2h4a Hist2h4 Hist4h4
    UniProtKB:   Protein Feature View | Search PDB | P62806  
    Molecule: HISTONE H2A.Z
    Polymer: 4 Type: protein Length: 128
    Chains: C, G
    Organism Homo sapiens
    Gene Names H2AFZ H2AZ
    UniProtKB:   Protein Feature View | Search PDB | P0C0S5  
    Molecule: HISTONE H2B
    Polymer: 5 Type: protein Length: 126
    Chains: D, H
    Organism Xenopus laevis
    UniProtKB:   Protein Feature View | Search PDB | P02281  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 5
    Scientific Name: Xenopus laevis   Taxonomy   Common Name: African clawed frog Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1AOI  X-RAY STRUCTURE OF THE NUCLEOSOME CORE PARTICLE AT 2.8 A 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MN
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    MN Mn
    MANGANESE (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0171
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Suto, R.K.,  Clarkson, M.J.,  Tremethick, D.J.,  Luger, K.

    Deposition:   2000-06-20
    Release:   2000-11-27
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.60
    R-Value: 0.192 (work)
    R-Free: 0.250
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 105.66 α = 90.00 
    b = 183.21 β = 90.00 
    c = 109.92 γ = 90.00