FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME DOI:10.2210/pdb1eg0/pdb EMDataBank  :1003

1EG0   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Ribosome Structure Weight: 224440.11 Molecule: FRAGMENT OF 16S RRNA HELIX 23 Polymer: 1 Type: rna Length: 33 Chains: I Fragment: RESIDUES 673-713 Details: MODELED AS ANALOGOUS FRAGMENT OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7 Organism Escherichia coli Molecule: FRAGMENT OF 23S RRNA Polymer: 2 Type: rna Length: 57 Chains: L Fragment: RESIDUES 1051-1108 Details: T. MARITIMA RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 1MMS Organism Escherichia coli Molecule: HELIX 95 OF 23S RRNA Polymer: 3 Type: rna Length: 26 Chains: M Details: E.COLI RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 480D Organism Escherichia coli Molecule: FORMYL-METHIONYL-TRNA Polymer: 4 Type: rna Length: 76 Chains: O Details: E.COLI FMET-TRNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 2FMT Organism Escherichia coli Molecule: PROTEIN (S4 RIBOSOMAL PROTEIN) Polymer: 5 Type: protein Length: 159 Chains: A Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1C06 Organism Escherichia coli Gene Name rpsD UniProtKB:   Protein Feature View | Search PDB | P81288     Molecule: PROTEIN (S5 RIBOSOMAL PROTEIN) Polymer: 6 Type: protein Length: 148 Chains: B Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1PKP Organism Escherichia coli Gene Name rpsE UniProtKB:   Protein Feature View | Search PDB | P02357     Molecule: PROTEIN (S6 RIBOSOMAL PROTEIN) Polymer: 7 Type: protein Length: 97 Chains: C Details: MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS Organism Escherichia coli Gene Names rpsF rps6 UniProtKB:   Protein Feature View | Search PDB | P23370     Molecule: PROTEIN (S7 RIBOSOMAL PROTEIN) Polymer: 8 Type: protein Length: 146 Chains: D Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1RSS Organism Escherichia coli Gene Names rpsG rps7 TTHA1696 UniProtKB:   Protein Feature View | Search PDB | P17291     Molecule: PROTEIN (S8 RIBOSOMAL PROTEIN) Polymer: 9 Type: protein Length: 138 Chains: E Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AN7 Organism Escherichia coli Gene Names rpsH TTHA1678 UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2     Molecule: PROTEIN (S15 RIBOSOMAL PROTEIN) Polymer: 10 Type: protein Length: 89 Chains: F Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32 Organism Escherichia coli Gene Names rpsO rps15 UniProtKB:   Protein Feature View | Search PDB | P80378     Molecule: PROTEIN (S17 RIBOSOMAL PROTEIN) Polymer: 11 Type: protein Length: 93 Chains: G Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRIES 1RIP AND 1QD7 Organism Escherichia coli Gene Name rpsQ UniProtKB:   Protein Feature View | Search PDB | P23828     Molecule: PROTEIN (S20 RIBOSOMAL PROTEIN) Polymer: 12 Type: protein Length: 100 Chains: H Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7 Organism Escherichia coli Molecule: PROTEIN (RIBOSOMAL PROTEIN L1) Polymer: 13 Type: protein Length: 229 Chains: N Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AD2 Organism Escherichia coli Gene Names rplA rpl1 UniProtKB:   Protein Feature View | Search PDB | P27150     Molecule: PROTEIN (RIBOSOMAL PROTEIN L6) Polymer: 14 Type: protein Length: 171 Chains: J Mutation: B. STEAROTHERMOPHILUS SEQUENCE AND MODEL Details: MODELED BY ANALOGOUS PROTEIN OF T. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL6 Organism Escherichia coli Gene Name rplF UniProtKB:   Protein Feature View | Search PDB | P02391     Molecule: PROTEIN (RIBOSOMAL PROTEIN L11) Polymer: 15 Type: protein Length: 140 Chains: K Details: MODELED BY ANALOGOUS PROTEIN OF T. MARITIMA TAKEN FROM PDB ENTRY 1MMS Organism Escherichia coli Gene Names rplK TM_0454 UniProtKB:   Protein Feature View | Search PDB | P29395         Source Hide Polymer: 1 Scientific Name: Escherichia coli   Taxonomy     Polymer: 2 Scientific Name: Escherichia coli   Taxonomy     Polymer: 3 Scientific Name: Escherichia coli   Taxonomy     Polymer: 4 Scientific Name: Escherichia coli   Taxonomy     Polymer: 5 Scientific Name: Escherichia coli   Taxonomy     Polymer: 6 Scientific Name: Escherichia coli   Taxonomy     Polymer: 7 Scientific Name: Escherichia coli   Taxonomy     Polymer: 8 Scientific Name: Escherichia coli   Taxonomy     Polymer: 9 Scientific Name: Escherichia coli   Taxonomy     Polymer: 10 Scientific Name: Escherichia coli   Taxonomy     Polymer: 11 Scientific Name: Escherichia coli   Taxonomy     Polymer: 12 Scientific Name: Escherichia coli   Taxonomy     Polymer: 13 Scientific Name: Escherichia coli   Taxonomy     Polymer: 14 Scientific Name: Escherichia coli   Taxonomy     Polymer: 15 Scientific Name: Escherichia coli   Taxonomy         Modified Residues Hide Identifier Formula Parent Type N Search  C5 H11 O7 P rnaLinking 4SU Search  C9 H13 N2 O8 P S U rnaLinking H2U Search  C9 H15 N2 O9 P U rnaLinking OMC Search  C10 H16 N3 O8 P C rnaLinking 5MU Search  C10 H15 N2 O9 P U rnaLinking PSU Search  C9 H13 N2 O9 P U rnaLinking UNK Search  C4 H9 N O2 lPeptideLinking     External Domain Annotations Hide SCOP Classification v1.75: 11 Domains - data from SCOP   Pfam Classification: 14 Domains - data from Pfam   GO Terms: 62 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Electron Microscopy Database Hide EMDataBank  :  1003     Data in orange boxes are gathered from external resources (when available). 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Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Gabashvili, I.S.,  Agrawal, R.K.,  Spahn, C.M.T.,  Grassucci, R.A.,  Svergun, D.I.,  Frank, J.,  Penczek, P. Deposition:   2000-02-11 Release:   2000-03-06 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   ELECTRON MICROSCOPY Exp. Data: EM Resolution [Å]: 11.5 Aggregation State: PARTICLE Symmetry Type: ASYMMETRIC Reconstruction Method: SINGLE PARTICLE Specimen Type: VITREOUS ICE (CRYO EM)     Molecule of the Month Hide Ribosomal Subunits Ribosome Aminoglycoside Antibiotics Transfer-Messenger RNA