1EG0

FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME

Structural Biology Knowledgebase: 1EG0 SBKB.org


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.5 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1EG0

Classification: RIBOSOME

Total Structure Weight: 224440.08


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (S4 RIBOSOMAL PROTEIN) A 159 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1C06
Gene Name(s): rpsD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S5 RIBOSOMAL PROTEIN) B 148 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1PKP
Gene Name(s): rpsE
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S6 RIBOSOMAL PROTEIN) C 97 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS
Gene Name(s): rpsF TTHA0245
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S7 RIBOSOMAL PROTEIN) D 146 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1RSS
Gene Name(s): rpsG rps7 TTHA1696
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S8 RIBOSOMAL PROTEIN) E 138 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AN7
Gene Name(s): rpsH TTHA1678
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S15 RIBOSOMAL PROTEIN) F 89 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32
Gene Name(s): rpsO TTHA1138
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S17 RIBOSOMAL PROTEIN) G 93 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRIES 1RIP AND 1QD7
Gene Name(s): rpsQ
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (S20 RIBOSOMAL PROTEIN) H 100 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7
PROTEIN (RIBOSOMAL PROTEIN L1) N 229 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AD2
Gene Name(s): rplA rpl1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (RIBOSOMAL PROTEIN L6) J 171 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL6
Gene Name(s): rplF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (RIBOSOMAL PROTEIN L11) K 140 Escherichia coli Details: MODELED BY ANALOGOUS PROTEIN OF T. MARITIMA TAKEN FROM PDB ENTRY 1MMS
Gene Name(s): rplK TM_0454
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
FRAGMENT OF 16S RRNA HELIX 23 I 33 Escherichia coli MODELED AS ANALOGOUS FRAGMENT OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7
FRAGMENT OF 23S RRNA L 57 Escherichia coli T. MARITIMA RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 1MMS
HELIX 95 OF 23S RRNA M 26 Escherichia coli E.COLI RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 480D
FORMYL-METHIONYL-TRNA O 76 Escherichia coli E.COLI FMET-TRNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 2FMT

Small Molecules
Modified Residues 7 Unique
ID Chains Type Formula 2D Diagram Parent
N
Query on N
I RNA LINKING C5 H11 O7 P --
4SU
Query on 4SU
O RNA LINKING C9 H13 N2 O8 P S U
H2U
Query on H2U
O RNA LINKING C9 H15 N2 O9 P U
OMC
Query on OMC
O RNA LINKING C10 H16 N3 O8 P C
5MU
Query on 5MU
O RNA LINKING C10 H15 N2 O9 P U
PSU
Query on PSU
O RNA LINKING C9 H13 N2 O9 P U
UNK
Query on UNK
H L-PEPTIDE LINKING C4 H9 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 11.5 Å
  • Aggregation State: Particle
  • Specimen Type: Vitreous Ice (cryo Em)
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-02-11
  • Released Date: 2000-03-06
  • Deposition author(s): Gabashvili, I.S., Agrawal, R.K., Spahn, C.M.T., Grassucci, R.A., Svergun, D.I., Frank, J., Penczek, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4