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FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME
1EG0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 224440.11
    Molecule: FRAGMENT OF 16S RRNA HELIX 23
    Polymer: 1 Type: rna Length: 33
    Chains: I
    Fragment: RESIDUES 673-713
    Details: MODELED AS ANALOGOUS FRAGMENT OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7
    Organism Escherichia coli
    Molecule: FRAGMENT OF 23S RRNA
    Polymer: 2 Type: rna Length: 57
    Chains: L
    Fragment: RESIDUES 1051-1108
    Details: T. MARITIMA RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 1MMS
    Organism Escherichia coli
    Molecule: HELIX 95 OF 23S RRNA
    Polymer: 3 Type: rna Length: 26
    Chains: M
    Details: E.COLI RNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 480D
    Organism Escherichia coli
    Molecule: FORMYL-METHIONYL-TRNA
    Polymer: 4 Type: rna Length: 76
    Chains: O
    Details: E.COLI FMET-TRNA SEQUENCE AND MODEL TAKEN FROM PDB ENTRY 2FMT
    Organism Escherichia coli
    Molecule: PROTEIN (S4 RIBOSOMAL PROTEIN)
    Polymer: 5 Type: protein Length: 159
    Chains: A
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1C06
    Organism Escherichia coli
    Gene Name rpsD
    UniProtKB:   Protein Feature View | Search PDB | P81288  
    Molecule: PROTEIN (S5 RIBOSOMAL PROTEIN)
    Polymer: 6 Type: protein Length: 148
    Chains: B
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1PKP
    Organism Escherichia coli
    Gene Name rpsE
    UniProtKB:   Protein Feature View | Search PDB | P02357  
    Molecule: PROTEIN (S6 RIBOSOMAL PROTEIN)
    Polymer: 7 Type: protein Length: 97
    Chains: C
    Details: MODELED BY ANALOGOUS PROTEIN OF T.THERMOPHILUS TAKEN FROM PDB ENTRY 1RIS
    Organism Escherichia coli
    Gene Names rpsF rps6
    UniProtKB:   Protein Feature View | Search PDB | P23370  
    Molecule: PROTEIN (S7 RIBOSOMAL PROTEIN)
    Polymer: 8 Type: protein Length: 146
    Chains: D
    Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1RSS
    Organism Escherichia coli
    Gene Names rpsG rps7 TTHA1696
    UniProtKB:   Protein Feature View | Search PDB | P17291  
    Molecule: PROTEIN (S8 RIBOSOMAL PROTEIN)
    Polymer: 9 Type: protein Length: 138
    Chains: E
    Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AN7
    Organism Escherichia coli
    Gene Names rpsH TTHA1678
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ2  
    Molecule: PROTEIN (S15 RIBOSOMAL PROTEIN)
    Polymer: 10 Type: protein Length: 89
    Chains: F
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1A32
    Organism Escherichia coli
    Gene Names rpsO rps15
    UniProtKB:   Protein Feature View | Search PDB | P80378  
    Molecule: PROTEIN (S17 RIBOSOMAL PROTEIN)
    Polymer: 11 Type: protein Length: 93
    Chains: G
    Details: MODELED BY ANALOGOUS PROTEIN OF B. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRIES 1RIP AND 1QD7
    Organism Escherichia coli
    Gene Name rpsQ
    UniProtKB:   Protein Feature View | Search PDB | P23828  
    Molecule: PROTEIN (S20 RIBOSOMAL PROTEIN)
    Polymer: 12 Type: protein Length: 100
    Chains: H
    Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1QD7
    Organism Escherichia coli
    Molecule: PROTEIN (RIBOSOMAL PROTEIN L1)
    Polymer: 13 Type: protein Length: 229
    Chains: N
    Details: MODELED BY ANALOGOUS PROTEIN OF T. THERMOPHILUS TAKEN FROM PDB ENTRY 1AD2
    Organism Escherichia coli
    Gene Names rplA rpl1
    UniProtKB:   Protein Feature View | Search PDB | P27150  
    Molecule: PROTEIN (RIBOSOMAL PROTEIN L6)
    Polymer: 14 Type: protein Length: 171
    Chains: J
    Mutation: B. STEAROTHERMOPHILUS SEQUENCE AND MODEL
    Details: MODELED BY ANALOGOUS PROTEIN OF T. STEAROTHERMOPHILUS TAKEN FROM PDB ENTRY 1RL6
    Organism Escherichia coli
    Gene Name rplF
    UniProtKB:   Protein Feature View | Search PDB | P02391  
    Molecule: PROTEIN (RIBOSOMAL PROTEIN L11)
    Polymer: 15 Type: protein Length: 140
    Chains: K
    Details: MODELED BY ANALOGOUS PROTEIN OF T. MARITIMA TAKEN FROM PDB ENTRY 1MMS
    Organism Escherichia coli
    Gene Names rplK TM_0454
    UniProtKB:   Protein Feature View | Search PDB | P29395  
     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    N
    Search 
    N C5 H11 O7 P rnaLinking
    4SU
    Search 
    4SU C9 H13 N2 O8 P S U rnaLinking
    H2U
    Search 
    H2U C9 H15 N2 O9 P U rnaLinking
    OMC
    Search 
    OMC C10 H16 N3 O8 P C rnaLinking
    5MU
    Search 
    5MU C10 H15 N2 O9 P U rnaLinking
    PSU
    Search 
    PSU C9 H13 N2 O9 P U rnaLinking
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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