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BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH THE PEPTIDE ANTIBIOTIC EFRAPEPTIN
1EFR
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/antibiotic
    Structure Weight: 355535.41
    Molecule: BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT ALPHA
    Polymer: 1 Type: protein Length: 510
    Chains: A, B, C
    EC#: 3.6.3.14   
    Organism Bos taurus
    Gene Names ATP5A1 ATP5A2
    UniProtKB:   Protein Feature View | Search PDB | P19483  
    Molecule: BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT BETA
    Polymer: 2 Type: protein Length: 482
    Chains: D, E, F
    EC#: 3.6.3.14   
    Organism Bos taurus
    Gene Name ATP5B
    UniProtKB:   Protein Feature View | Search PDB | P00829  
    Molecule: BOVINE MITOCHONDRIAL F1-ATPASE SUBUNIT GAMMA
    Polymer: 3 Type: protein Length: 272
    Chains: G
    EC#: 3.6.3.14   
    Organism Bos taurus
    Gene Names ATP5C1 ATP5C
    UniProtKB:   Protein Feature View | Search PDB | P05631  
    Molecule: EFRAPEPTIN C
    Polymer: 4 Type: protein Length: 17
    Chains: Q
    Organism Tolypocladium inflatum
    Membrane Protein:   Source: mpstruc
    ALPHA-HELICAL
    F-type ATPase
    F1-ATPase from bovine heart mitochondria
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 2
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 3
    Scientific Name: Bos taurus   Taxonomy   Common Name: Cattle  
    Polymer: 4
    Scientific Name: Tolypocladium inflatum   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1BMF  BOVINE MITOCHONDRIAL F1-ATPASE 
    1COW  BOVINE MITOCHONDRIAL F1-ATPASE COMPLEXED WITH AUROVERTIN B 
     
  •   Biologically Interesting Molecules (BIRD) Hide
    Identifier Image Name Type Class Chain ID  
    PRD_000186 Search  PRD_000186 EFRAPEPTIN C Polypeptide Antimicrobial Q
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ADP
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    Download 
    ADP C10 H15 N5 O10 P2
    ADENOSINE-5'-DIPHOSPHATE
    ANP
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    Download 
    ANP C10 H17 N6 O12 P3
    PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    ACE
    Search 
    ACE C2 H4 O nonPolymer
    YCP
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    YCP C6 H11 N O2 lPeptideLinking
    AIB
    Search 
    AIB C4 H9 N O2 ALA lPeptideLinking
    BAL
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    BAL C3 H7 N O2
    TLX
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    TLX C13 H27 N3 nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 generated by PISA 1.18 (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Abrahams, J.P.,  Buchanan, S.K.,  Van Raaij, M.J.,  Fearnley, I.M.,  Leslie, A.G.W.,  Walker, J.E.

    Deposition:   1996-05-24
    Release:   1997-02-12
    Last Modified (REVDAT):   2011-07-27
     
  •   Revision History    Hide
    Mouse over text for details
    2012-12-12
    Other
    2011-07-27
    Atom nomenclature
    2011-07-27
    Binding sites and description
    2011-07-27
    Non-polymer description
    2011-07-27
    Function and keywords
    2011-07-27
    Linkage
    2011-07-27
    Sequence database correspondence
    2011-07-27
    Polymer description
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.10
    R-Value: 0.177 (work)
    R-Free: 0.220
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 285.70 α = 90.00 
    b = 107.40 β = 90.00 
    c = 139.50 γ = 90.00