1E9F

MUTANT HUMAN THYMIDYLATE KINASE COMPLEXED WITH TMP AND ADP

Structural Biology Knowledgebase: 1E9F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.226

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1E9F

Classification: PHOSPHOTRANSFERASE

Total Structure Weight: 25021.94

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDYLATE KINASE A 217 Escherichia coli Homo sapiens EC#: 2.7.4.9 IUBMB
Mutation: R200A, R16G, L184I, L191I, E190D, R183S
Gene Name(s): tmk ycfG b1098 JW1084 DTYMK Gene View CDC8 TMPK TYMK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TMP
Query on TMP

A THYMIDINE-5'-PHOSPHATE
C10 H15 N2 O8 P
GYOZYWVXFNDGLU-XLPZGREQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.226
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 100.20 α = 90.00
b = 100.20 β = 90.00
c = 49.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-11
  • Released Date: 2001-10-11
  • Deposition author(s): Ostermann, N., Lavie, A., Padiyar, S., Brundiers, R., Veit, T., Reinstein, J., Goody, R.S., Konrad, M., Schlichting, I.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4