1E3B

CYCLOPHILIN 3 FROM C.ELEGANS COMPLEXED WITH AUP(ET)3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.247 
  • R-Value Observed: 0.185 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.5 of the entry. See complete history


Literature

First Crystal Structure of a Medicinally Relevant Gold Protein Complex:Unexpected Binding of [Au(Pet (3))](+) to Histidine

Zou, J.Taylor, P.Dornan, J.Robinson, S.P.Walkinshaw, M.D.Sadler, P.J.

(2000) Angew Chem Int Ed Engl 39: 2931


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CYCLOPHILIN 3173Caenorhabditis elegansMutation(s): 0 
UniProt
Find proteins for P52011 (Caenorhabditis elegans)
Explore P52011 
Go to UniProtKB:  P52011
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP52011
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AU
Query on AU

Download Ideal Coordinates CCD File 
B [auth A]GOLD ION
Au
ZBKIUFWVEIBQRT-UHFFFAOYSA-N
3EP
Query on 3EP

Download Ideal Coordinates CCD File 
C [auth A]TRIETHYLPHOSPHANE
C6 H15 P
RXJKFRMDXUJTEX-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.247 
  • R-Value Observed: 0.185 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 61.157α = 90
b = 61.157β = 90
c = 123.077γ = 90
Software Package:
Software NamePurpose
SHELXL-97refinement
DENZOdata reduction
SCALEPACKdata scaling
SHELXL-97phasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2000-10-22
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-05-08
    Changes: Data collection, Experimental preparation, Other
  • Version 1.4: 2019-05-22
    Changes: Data collection, Refinement description
  • Version 1.5: 2024-05-01
    Changes: Data collection, Database references, Derived calculations, Refinement description