1E2N

HPT + HMTT

Structural Biology Knowledgebase: 1E2N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.208

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1E2N

Classification: TRANSFERASE

Total Structure Weight: 72343.44

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE KINASE A, B 331 Human herpesvirus 1 EC#: 2.7.1.21 IUBMB
Gene Name(s): TK UL23
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RCA
Query on RCA

A, B 6-{[4-(HYDROXYMETHYL)-5-METHYL-2,6-DIOXOHEXAHYDROPYRIMIDIN- 5-YL]METHYL}-5-METHYLPYRIMIDINE-2,4(1H,3H)- DIONE
HYDROXYMETHYL-HYDROTHYMYL-THYMINE; 5-[THYMIN- 6-YL]METHYL-6-HYDRO-6-HYDROXYMETHYL-THYMINE (Synonym)
C12 H16 N4 O5
KBBKHMIEEMSXSM-JVXZTZIISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RCA N/A in BindingDB
Ki: 30900 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.208
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.60 α = 90.00
b = 118.80 β = 90.00
c = 108.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-23
  • Released Date: 2001-03-31
  • Deposition author(s): Vogt, J., Scapozza, L., Schulz, G.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4