THE NUCLEOSIDE BINDING SITE OF HERPES SIMPLEX TYPE 1 THYMIDINE KINASE ANALYZED BY X-RAY CRYSTALLOGRAPHY DOI:10.2210/pdb1e2j/pdb

1E2J   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 72207.37 Molecule: THYMIDINE KINASE Polymer: 1 Type: protein Length: 331 Chains: A, B EC#: 2.7.1.21    Mutation: YES Organism Herpes simplex virus (type 1 / strain 17) Gene Names TK UL23 UniProtKB:   Protein Feature View | Search PDB | P03176         Source Hide Polymer: 1 Scientific Name: Herpes simplex virus (type 1/strain 17)   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 1E2H    1E2I    1E2K    1E2L    1E2M    1E2N    1E2P    1KI2    1KI4    1KI5    1KI6    1KI7    1KI8    1KIM    1VTK    2VTK    3VTK        Ligand Chemical Component Hide Identifier Formula Name Interactions SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer THM Search  Download  C10 H14 N2 O5 THYMIDINE   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) THM Search  Download  IC50: 1000 nM (98) - data from BindingDB   ΔG: -30.2 - -29.4 kJ/mol (99) - data from BindingDB   ΔH: -79.9 - -57.1 kJ/mol (99) - data from BindingDB   -TΔS: 27.2 - 50.1 kJ/mol (99) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     External Domain Annotations Hide SCOP Classification v1.75: 2 Domains - data from SCOP   CATH Classification v3.4.0: 2 Domains - data from CATH   Pfam Classification: 1 Domain - data from Pfam   GO Terms: 8 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PQS (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Vogt, J.,  Scapozza, L.,  Schulz, G.E. Deposition:   2000-05-23 Release:   2000-11-06 Last Modified (REVDAT):   2009-02-24     Revision History    Hide Mouse over text for details 2011-07-13 Version format compliance     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.50 R-Value: 0.212 (work) R-Free: 0.273 Space Group: C 2 2 21 Unit Cell:   Length [Å] Angles [°] a = 113.40 α = 90.00  b = 117.50 β = 90.00  c = 108.60 γ = 90.00