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DEAMIDATED DERIVATIVE OF BOVINE PANCREATIC RIBONUCLEASE
1DY5
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 28423.92
    Molecule: RIBONUCLEASE A
    Polymer: 1 Type: protein Length: 124
    Chains: A, B
    EC#: 3.1.27.5   
    Mutation: YES
    Details: ASN 67 REPLACED BY A BETA-ASPARTYL RESIDUE
    Organism Bos taurus
    Gene Names RNASE1 RNS1
    UniProtKB:   Protein Feature View | Search PDB | P61823  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine  
     
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    Identifier Details
    1A2W  CRYSTAL STRUCTURE OF A 3D DOMAIN-SWAPPED DIMER OF BOVINE PANCREATIC RIBONUCLEASE A 
    1A5P  C[40,95]A VARIANT OF BOVINE PANCREATIC RIBONUCLEASE A 
    1A5Q  P93A VARIANT OF BOVINE PANCREATIC RIBONUCLEASE A 
    1AFK  CRYSTAL STRUCTURE OF RIBONUCLEASE A IN COMPLEX WITH 5'-DIPHOSPHOADENOSINE-3'- PHOSPHATE 
    1AFL  RIBONUCLEASE A IN COMPLEX WITH 5'- DIPHOSPHOADENOSINE 2'-PHOSPHATE AT 1.7 ANGSTROM RESOLUTION 
    1AFU  STRUCTURE OF RIBONUCLEASE A AT 2.0 ANGSTROMS FROM MONOCLINIC CRYSTALS 
    1AQP  RIBONUCLEASE A COPPER COMPLEX 
    1B6V  CRYSTAL STRUCTURE OF A HYBRID BETWEEN RIBONUCLEASE A AND BOVINE SEMINAL RIBONUCLEASE 
    1BEL  HYDROLASE PHOSPHORIC DIESTER, RIBONUCLEIC ACID 
    1BZQ  COMPLEX OF A DROMEDARY SINGLE-DOMAIN VHH ANTIBODY FRAGMENT WITH RNASE A 
    1C0B  BOVINE PANCREATIC RIBONUCLEASE A DESICCATED FOR 2.5 DAYS 
    1C0C  BOVINE PANCREATIC RIBONUCLEASE A DESICCATED FOR 4.0 DAYS 
    1C8W  THR45GLY VARIANT OF RIBONUCLEASE A 
    1C9V  H12A VARIANT OF RIBONUCLEASE A 
    1C9X  H119A VARIANT OF RIBONUCLEASE A 
    1CJQ  X-RAY CRYSTALLOGRAPHIC STUDIES OF THE DENATURATION OF THE DENATURATION OF RIBONUCLEASE S. 
    1CJR  X-RAY CRYSTALLOGRAPHIC STUDIES OF DENATURATION IN RIBONUCLEASE S 
    1D5D  THE ROLE OF PHENYLALANINE 8 IN THE STABILIZATION OF THE SPROTEIN-S PEPTIDE INTERACTION: PACKING AND CAVITIES 
    1D5E  THE ROLE OF PHENYLALANINE 8 IN THE STABILIZATION OF THE SPROTEIN-S PEPTIDE INTERACTION: PACKING AND CAVITIES 
    1D5H  RNASE S(F8A). MUTANT RIBONUCLEASE S. 
    1DFJ  RIBONUCLEASE INHIBITOR COMPLEXED WITH RIBONUCLEASE A 
    1EIC  CRYSTAL STRUCTURE OF F120A MUTANT OF BOVINE PANCREATICRIBONUCLEASE A 
    1EID  CRYSTAL STRUCTURE OF F120G MUTANT OF BOVINE PANCREATICRIBONUCLEASE A 
    1EIE  CRYSTAL STRUCTURE OF F120W MUTANT OF BOVINE PANCREATICRIBONUCLEASE A 
    1EOS  CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2', 5')GUANOSINE (PRODUCTIVE BINDING) 
    1EOW  CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2', 5')GUANOSINE (NON- PRODUCTIVE BINDING) 
    1F0V  CRYSTAL STRUCTURE OF AN RNASE A DIMER DISPLAYING A NEW TYPE OF 3D DOMAIN SWAPPING 
    1FEV  CRYSTAL STRUCTURE OF THE ALA4AIB MUTATION IN RNASE S 
    1FS3  CRYSTAL STRUCTURE OF WILD-TYPE BOVINE PANCREATICRIBONUCLEASE A 
    1GV7  GUEST-HOST CROSSTALK IN AN ANGIOGENIN/RNASE A CHIMERIC PROTEIN 
    1IZP  F46L MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A 
    1IZQ  F46V MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A 
    1IZR  F46A MUTANT OF BOVINE PANCREATIC RIBONUCLEASE A 
    1J7Z  OSMOLYTE STABILIZATION OF RIBONUCLEASE 
    1J80  OSMOLYTE STABILIZATION OF RNASE 
    1J81  OSMOLYTE STABILIZATION OF RNASE 
    1J82  OSMOLYTE STABILIZATION OF RNASE 
    1JN4  THE CRYSTAL STRUCTURE OF RIBONUCLEASE A IN COMPLEX WITH 2'-DEOXYURIDINE 3'-PYROPHOSPHATE (P'-5') ADENOSINE 
    1JS0  CRYSTAL STRUCTURE OF 3D DOMAIN-SWAPPED RNASE A MINOR TRIMER 
    1JVT  CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND- FREE FORM) 
    1JVU  CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM) 
    1JVV  CRYSTAL STRUCTURE OF RIBONUCLEASE A (RETRO- SOAKED FORM) 
    1KF2  ATOMIC RESOLUTION STRUCTURE OF RNASE A AT PH 5.2 
    1KF3  ATOMIC RESOLUTION STRUCTURE OF RNASE A AT PH 5.9 
    1KF4  ATOMIC RESOLUTION STRUCTURE OF RNASE A AT PH 6.3 
    1KF5  ATOMIC RESOLUTION STRUCTURE OF RNASE A AT PH 7.1 
    1KF7  ATOMIC RESOLUTION STRUCTURE OF RNASE A AT PH 8.0 
    1KF8  ATOMIC RESOLUTION STRUCTURE OF RNASE A AT PH 8.8 
    1KH8  STRUCTURE OF A CIS-PROLINE (P114) TO GLYCINE VARIANT OFRIBONUCLEASE A 
    1LSQ  RIBONUCLEASE A WITH ASN 67 REPLACED BY A BETA-ASPARTYL RESIDUE 
    1O0F  RNASE A IN COMPLEX WITH 3',5'-ADP 
    1O0H  RIBONUCLEASE A IN COMPLEX WITH 5'-ADP 
    1O0M  RIBONUCLEASE A IN COMPLEX WITH URIDINE-2'- PHOSPHATE 
    1O0N  RIBONUCLEASE A IN COMPLEX WITH URIDINE-3'- PHOSPHATE 
    1O0O  RIBONUCLEASE A IN COMPLEX WITH ADENOSINE-2 ',5'-DIPHOSPHATE 
    1QHC  CRYSTAL STRUCTURE OF RIBONUCLEASE A IN COMPLEX WITH 5'- PHOSPHO-2'-DEOXYURIDINE-3 '-PYROPHOSPHATE ADENOSINE-3'- PHOSPHATE 
    1RAR  RIBONUCLEASE A FLUORESCENT DERIVATIVE [RNASE 1 -124 (AENS-HIS -12)] FROM NACL CRYSTAL 
    1RAS  RIBONUCLEASE A FLUORESCENT DERIVATIVE [RNASE 1 -124 (AENS-HIS-12)] FROM AMMONIUM SULFATE CRYSTAL 
    1RAT  RIBONUCLEASE A AT 98K 
    1RBB  RIBONUCLEASE B 
    1RBC  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY ALA (M13A) 
    1RBD  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY ALPHA-AMINO-NORMAL-BUTYRIC ACID (M13ABA) 
    1RBE  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY PHE (M13F) 
    1RBF  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY GLY (M13G) 
    1RBG  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY ILE (M13I) 
    1RBH  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY LEU (M13L) 
    1RBI  RIBONUCLEASE S MUTANT WITH MET 13 REPLACED BY VAL (M13V) 
    1RBJ  RIBONUCLEASE B COMPLEX WITH D(TETRA-(DEOXY- ADENYLATE)) 
    1RBN  RIBONUCLEASE A DERIVATIVE II COMPLEXED WITH 6-CHLOROPURINE RIBOSIDE 5'-MONOPHOSPHATE 
    1RBW  RIBONUCLEASE A WITH GUANIDINIUM 
    1RBX  RIBONUCLEASE A CONTROL 
    1RCA  MOL_ID: 1; MOLECULE: RIBONUCLEASE A; CHAIN: NULL; SYNONYM: RNASE A; EC: 3.1.27.5; HETEROGEN: DEOXYCYTIDYLYL-3',5'-GUANOSINE (3 ',5'-DCPDG); OTHER_DETAILS: CO-CRYSTALLIZED COMPLEX 
    1RCN  RIBONUCLEASE A COMPLEXED WITH DEOXYRIBONUCLEIC ACID (5'-D(APTPAPAP)-3') 
    1RHA  RIBONUCLEASE A (LOW HUMIDITY FORM: RELATIVE HUMIDITY 79 %) 
    1RHB  RIBONUCLEASE A (LOW HUMIDITY FORM: RELATIVE HUMIDITY 88 %) 
    1RNC  RIBONUCLEASE A COMPLEX WITH CYTIDYLYL-2',5 '-GUANOSINE (2',5'-CPG) 
    1RND  RIBONUCLEASE A COMPLEX WITH DEOXYCYTIDYLYL-3 ',5'-GUANOSINE (3',5'-DCPDG) 
    1RNM  RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID ( 5'CMP) CRYSTALLIZED FROM 80% AMMONIUM SULPHATE 
    1RNN  RIBONUCLEASE A COMPLEX WITH CYTIDYLIC ACID ( 5'CMP) CRYSTALLIZED FROM 8M SODIUM FORMATE 
    1RNO  RIBONUCLEASE A CRYSTALLIZED FROM 80% AMMONIUM SULPHATE 
    1RNQ  RIBONUCLEASE A CRYSTALLIZED FROM 8M SODIUM FORMATE 
    1RNU  RIBONUCLEASE S (PH 5.5) 
    1RNV  RIBONUCLEASE S (PH 4.75) 
    1RNW  RECOMBINANT RIBONUCLEASE A CRYSTALLIZED FROM 80% AMMONIUM SULPHATE 
    1RNX  RIBONUCLEASE A CRYSTALLIZED FROM 3M SODIUM CHLORIDE, 30% AMMONIUM SULFATE 
    1RNY  RIBONUCLEASE A CRYSTALLIZED FROM 3M CESIUM CHLORIDE, 30% AMMONIUM SULFATE 
    1RNZ  RIBONUCLEASE A CRYSTALLIZED FROM 2.5M SODIUM CHLORIDE, 3.3M SODIUM FORMATE 
    1ROB  RIBONUCLEASE A COMPLEXED WITH CYTIDYLIC ACID 
    1RPF  RIBONUCLEASE A COMPLEXED WITH CYTIDINE-3'- MONOPHOSPHATE (RNASE A/3'-CMP) 
    1RPG  RIBONUCLEASE A COMPLEXED WITH DEOXYCYTIDYL-3 ',5'-DEOXYADENOSINE (RNASE A/D(CPA) 
    1RPH  RIBONUCLEASE A 
    1RSM  LYS-7-(DINITROPHENYLENE)-LYS-41 CROSS-LINKED RIBONUCLEASE A 
    1RTA  RIBONUCLEASE A COMPLEX WITH THYMIDYLIC ACID TETRAMER 
    1RTB  RIBONUCLEASE A (RNASE A) 
    1RUV  RIBONUCLEASE A-URIDINE VANADATE COMPLEX: HIGH RESOLUTION RESOLUTION X-RAY STRUCTURE (1.3 A) 
    1SRN  SEMISYNTHETIC RIBONUCLEASE A (RNASE 1-118( COLON)111-124) 
    1SSA  RIBONUCLEASE A (RESIDUES 1 - 118) COMPLEXED WITH SYNTHETIC RIBONUCLEASE A (RESIDUES 111 - 124, PHE 120 REPLACED BY LEU (F120L)) 
    1SSB  RIBONUCLEASE A (RESIDUES 1 - 118) COMPLEXED WITH SYNTHETIC RIBONUCLEASE A (RESIDUES 111 - 124, PHE 120 REPLACED BY TYR (F120Y)) 
    1SSC  RIBONUCLEASE A (SEMISYNTHETIC) CRYSTALLIZED FROM AQUEOUS ETHANOL [RNASE 1-118:111-124] 
    1U1B  STRUCTURE OF BOVINE PANCREATIC RIBONUCLEASE A IN COMPLEXWITH 3'-PHOSPHOTHYMIDINE (3'-5')- PYROPHOSPHATE ADENOSINE3'-PHOSPHATE 
    1W4O  BINDING OF NONNATURAL 3'-NUCLEOTIDES TO RIBONUCLEASE A 
    1W4P  BINDING OF NONNATURAL 3'-NUCLEOTIDES TO RIBONUCLEASE A 
    1W4Q  BINDING OF NONNATURAL 3'-NUCLEOTIDES TO RIBONUCLEASE A 
    1WBU  FRAGMENT BASED LEAD DISCOVERY USING CRYSTALLOGRAPHY 
    1XPS  BOVINE RIBONUCLEASE A (PHOSPHATE-FREE) (93 % HUMIDITY) 
    1XPT  BOVINE RIBONUCLEASE A (PHOSPHATE-FREE) 
    1YMN  THE STUDY OF REDUCTIVE UNFOLDING PATHWAYS OF RNASE A (Y92LMUTANT) 
    1YMR  THE STUDY OF REDUCTIVE UNFOLDING PATHWAYS OF RNASE A (Y92AMUTANT) 
    1YMW  THE STUDY OF REDUCTIVE UNFOLDING PATHWAYS OF RNASE A (Y92GMUTANT) 
    1Z3L  X-RAY CRYSTAL STRUCTURE OF A MUTANT RIBONUCLEASE S (F8ANB) 
    1Z3M  CRYSTAL STRUCTURE OF MUTANT RIBONUCLEASE S ( F8NVA) 
    1Z3P  X-RAY CRYSTAL STRUCTURE OF A MUTANT RIBONUCLEASE S (M13NVA) 
    1Z6D  RIBONUCLEASE A- IMP COMPLEX 
    1Z6S  RIBONUCLEASE A- AMP COMPLEX 
    2AAS  RIBONUCLEASE A (NMR, 32 STRUCTURES) 
    2APQ  CRYSTAL STRUCTURE OF AN ACTIVE SITE MUTANT OF BOVINEPANCREATIC RIBONUCLEASE A (H119A- RNASE A) WITH A 10-GLUTAMINE EXPANSION IN THE C-TERMINAL HINGE-LOOP. 
    2BLP  RNASE BEFORE UNATTENUATED X-RAY BURN 
    2BLZ  RNASE AFTER A HIGH DOSE X-RAY "BURN" 
    2RAT  RIBONUCLEASE A AT 130K 
    2RLN  RIBONUCLEASE S MUTANT WITH MET S 13 REPLACED BY NORLEUCINE (M(S 13)NLE) 
    2RNS  RIBONUCLEASE S (PH 4.75) 
    2W5G  RNASE A-5'-ATP COMPLEX 
    2W5I  RNASE A-AP3A COMPLEX 
    2W5K  RNASE A-NADPH COMPLEX 
    2W5L  RNASE A-NADP COMPLEX 
    2W5M  RNASE A-PYROPHOSPHATE ION COMPLEX 
    3RAT  RIBONUCLEASE A AT 160K 
    3RN3  RIBONUCLEASE A 
    3RSD  STRUCTURE OF THE D121N VARIANT OF RIBONUCLEASE A 
    3RSK  STRUCTURE OF THE K7A/R10A/K66A VARIANT OF RIBONUCLEASE A 
    3RSP  STRUCTURE OF THE P93G VARIANT OF RIBONUCLEASE A 
    3SRN  SEMISYNTHETIC RIBONUCLEASE A MUTANT WITH ASP 121 REPLACED BY ASN (D121N) (RNASE 1-118: 111-124 (D121N)) 
    4RAT  RIBONUCLEASE A AT 180K 
    4RSD  STRUCTURE OF THE D121A VARIANT OF RIBONUCLEASE A 
    4RSK  STRUCTURE OF THE K7A/R10A/K66A VARIANT OF RIBONUCLEASE A COMPLEXED WITH 3'-UMP 
    4SRN  SEMISYNTHETIC RIBONUCLEASE A MUTANT WITH ASP 121 REPLACED BY ALA (D121A) (RNASE 1-118: 111-124 (D121A)) 
    5RAT  RIBONUCLEASE A AT 220K 
    5RSA  RIBONUCLEASE A (JOINT NEUTRON AND X-RAY) 
    6RAT  RIBONUCLEASE A AT 240K 
    7RAT  RIBONUCLEASE A AT 260K 
    7RSA  RIBONUCLEASE A (PHOSPHATE-FREE) 
    8RAT  RIBONUCLEASE A AT 300K 
    8RSA  RIBONUCLEASE A (PHOSPHATE-FREE) COMPLEX WITH N==E2.12==-N-ACETYL DEOXYTHYMIDINE 
    9RAT  RIBONUCLEASE A AT 320K 
    9RSA  RIBONUCLEASE A (PHOSPHATE-FREE) COMPLEX WITH N==D1.119==-N-ACETYL DEOXYURIDINE 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    ACT
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    Download      		ACT C2 H3 O2
    ACETATE ION
    IPA
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    Download      		IPA C3 H8 O
    ISOPROPYL ALCOHOL
    SO4
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    Download      		SO4 O4 S
    SULFATE ION
     
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    Identifier Formula Parent Type
    IAS
    Search      		IAS C4 H7 N O4
     
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Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Esposito, L.,  Vitagliano, L.,  Sica, F.,  Zagari, A.,  Mazzarella, L.

    Deposition:   2000-01-27
    Release:   2000-03-28
    Last Modified (REVDAT):   2011-07-13
     
  •   Revision History    Hide
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    2011-07-13
    Non-polymer description
    2011-07-13
    Version format compliance
    2011-07-13
    Linkage
    2011-07-13
    Sequence database correspondence
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   0.87
    R-Value: 0.101 (obs.)
    R-Free: 0.120
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 61.31 α = 90.00 
    b = 37.47 β = 94.55 
    c = 44.92 γ = 90.00