1DMP

STRUCTURE OF HIV-1 PROTEASE COMPLEX

Structural Biology Knowledgebase: 1DMP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DMP

Classification: ASPARTYL PROTEINASE

Total Structure Weight: 22084.20

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: C67X, C95A
Details: COMPLEX WITH DMP450 OF DUPONT MERCK
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DMQ
Query on DMQ

B [4-R-(-4-ALPHA,5-ALPHA,6-BETA,7-BETA)]-HEXAHYDRO- 5,6-BIS(HYDROXY)-1,3-BIS([(3-AMINO)PHENYL]METHYL)- 4,7-BIS(PHENYLMETHYL)-2H-1,3-DIAZEPINONE
DMP450(INHIBITOR OF DUPONT MERCK) (Synonym)
C33 H36 N4 O3
KYRSNWPSSXSNEP-ZRTHHSRSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DMQ Ki: 0.28 - 0.34 nM (86 - 98) BindingDB

Ki: 0.28 nM  BindingMOAD
Ki: 0.28 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A, B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.210
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 62.80 α = 90.00
b = 62.80 β = 90.00
c = 83.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-11-01
  • Released Date: 1997-11-12
  • Deposition author(s): Chang, C.-H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4