1BDY

C2 DOMAIN FROM PROTEIN KINASE C DELTA

• PDB DOI: https://doi.org/10.2210/pdb1BDY/pdb

• Classification: CALCIUM-BINDING
• Organism(s): Rattus norvegicus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 1998-05-11 Released: 1998-10-14 
• Deposition Author(s): Pappa, H., Murray-Rust, J., Dekker, L.V., Parker, P.J., Mcdonald, N.Q.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.247 
• R-Value Work: 0.198 
• R-Value Observed: 0.198 

Literature

Crystal structure of the C2 domain from protein kinase C-delta.

Pappa, H., Murray-Rust, J., Dekker, L.V., Parker, P.J., McDonald, N.Q.

(1998) Structure 6: 885-894

• PubMed: 9687370 
• DOI: https://doi.org/10.1016/s0969-2126(98)00090-2
• Primary Citation of Related Structures:  
  1BDY


• PubMed Abstract: 
  

  The protein kinase C (PKC) family of lipid-dependent serine/theonine kinases plays a central role in many intracellular eukaryotic signalling events. Members of the novel (delta, epsilon, eta, theta) subclass of PKC isotypes lack the Ca2+ dependence of the conventional PKC isotypes and have an N-terminal C2 domain, originally defined as V0 (variable domain zero). Biochemical data suggest that this domain serves to translocate novel PKC family members to the plasma membrane and may influence binding of PKC activators.

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Organizational Affiliation: 

Structural Biology, Imperial Cancer Research Fund, London, UK.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 28.03 kDa 
• Atom Count: 2,008 
• Modelled Residue Count: 246 
• Deposited Residue Count: 246 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN KINASE C	A, B	123	Rattus norvegicus	Mutation(s): 0  EC: 2.7.1.37
UniProt
Find proteins for P09215 (Rattus norvegicus) Explore P09215  Go to UniProtKB:  P09215

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 0.247 
• R-Value Work: 0.198 
• R-Value Observed: 0.198 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.72	α = 90
b = 60.69	β = 90
c = 120.9	γ = 90

Software Package:

Software Name	Purpose
X-PLOR	model building
X-PLOR	refinement
DENZO	data reduction
SCALEPACK	data scaling
X-PLOR	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 1998-10-14 
Deposition Author(s): Pappa, H., Murray-Rust, J., Dekker, L.V., Parker, P.J., Mcdonald, N.Q.

Revision History  

• Version 1.0: 1998-10-14
  Type: Initial release
  
• Version 1.1: 2008-03-24
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-07
  Changes: Data collection, Database references, Other