1AFV

HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3

Structural Biology Knowledgebase: 1AFV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.324
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1AFV

Classification: Viral protein / Immune system

Total Structure Weight: 128733.09

Macromolecule Entities
Molecule Chains Length Organism Details
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN A, B 151 Human immunodeficiency virus 1 Fragment: AMINO-TERMINAL DOMAIN RESIDUES 1 - 151
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) L, M 217 Mus musculus Fragment: LIGHT CHAIN RESIDUES 1 - 217, HEAVY CHAIN RESIDUES 1 - 220
Mutation: M4L, S18R, V19A, E30D, Y31N, T34I, L36F, Q38N, Y40F, G54A, V58L, E59G, V82M, D85E, I87T, I89M, R96K, K97E, A100L, S104A, L108V, I110L
ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) H, K 220 Mus musculus Fragment: LIGHT CHAIN RESIDUES 1 - 217, HEAVY CHAIN RESIDUES 1 - 220
Mutation: E1Q, K3Q, H5Q, E6Q, S7P, P9S, G10V, T16A, I20L, N31S, Y32S, L34I, G35H, V37A, H43Q, D50E, Y52H, G54N, G55S, Y57N, A72V, M81V, Q82D, F95Y, F99W, Y100R, S104P, ΔW127, V109Y, V116L

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PB
Query on PB

L, M LEAD (II) ION
Pb
RVPVRDXYQKGNMQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.7 Å
  • R-Value Free: 0.324
  • R-Value Work: 0.217
  • Space Group: P 21 2 21

Unit Cell:

Length (Å) Angle (°)
a = 119.90 α = 90.00
b = 92.30 β = 90.00
c = 149.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-03-14
  • Released Date: 1997-08-20
  • Deposition author(s): Momany, C., Kovari, L.C., Prongay, A.J., Keller, W., Gitti, R.K., Lee, B.M., Gorbalenya, A.E., Tong, L., Mcclure, J., Ehrlich, L.S., Summers, M.F., Carter, C., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4