GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4F96 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4F96_GDP_B_501 | 80% | 24% | 0.111 | 0.959 | 1.13 | 1.93 | 2 | 7 | 0 | 0 | 100% | 1 |
4F96_GDP_A_501 | 79% | 24% | 0.111 | 0.956 | 1.17 | 1.95 | 2 | 7 | 0 | 0 | 100% | 1 |
4F97_GDP_A_501 | 94% | 22% | 0.084 | 0.984 | 1.1 | 2.1 | 1 | 9 | 0 | 0 | 100% | 1 |
8IYF_GDP_B_501 | 79% | 48% | 0.112 | 0.959 | 0.92 | 1.07 | - | 2 | 1 | 0 | 100% | 1 |
3VDN_GDP_B_501 | 72% | 25% | 0.129 | 0.954 | 1.11 | 1.92 | 2 | 8 | 2 | 0 | 100% | 1 |
4F9F_GDP_B_600 | 56% | 40% | 0.164 | 0.935 | 0.94 | 1.37 | 1 | 4 | 2 | 0 | 100% | 1 |
8IYE_GDP_A_501 | 41% | 47% | 0.198 | 0.914 | 0.9 | 1.15 | 1 | 3 | 1 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |