Ligand validation:3VDN

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 3VDN designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3VDN_GDP_B_501	72%	28%	0.129	0.954	1.11	1.92	2	8	2	0	100%	1
4F97_GDP_A_501	94%	25%	0.084	0.984	1.1	2.1	1	9	0	0	100%	1
4F96_GDP_B_501	80%	27%	0.111	0.959	1.13	1.93	2	7	0	0	100%	1
8IYF_GDP_B_501	79%	49%	0.112	0.959	0.92	1.07	-	2	1	0	100%	1
4F9F_GDP_B_600	55%	42%	0.164	0.935	0.94	1.37	1	4	2	0	100%	1
8IYE_GDP_A_501	41%	47%	0.198	0.914	0.9	1.15	1	3	1	0	100%	1
1RRG_GDP_A_183	100%	19%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
8CNJ_GDP_B_201	100%	56%	0.04	0.992	0.91	0.77	1	-	0	0	100%	1
5UQW_GDP_A_1002	100%	47%	0.04	0.99	1.04	1.01	2	2	0	0	100%	1
2PHN_GDP_A_2696	100%	45%	0.046	0.99	1.08	1.08	1	2	0	0	100%	1

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.