GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3Q5E designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3Q5E_GDP_G_3850 | 77% | 43% | 0.139 | 0.979 | 1.06 | 1.21 | 1 | 4 | 1 | 0 | 100% | 1 |
| 3Q5E_GDP_E_3850 | 74% | 40% | 0.153 | 0.984 | 1.08 | 1.31 | 1 | 5 | 2 | 0 | 100% | 1 |
| 3Q5E_GDP_A_3850 | 73% | 39% | 0.145 | 0.972 | 0.97 | 1.45 | 2 | 4 | 2 | 0 | 100% | 1 |
| 3Q5E_GDP_C_3850 | 72% | 40% | 0.153 | 0.977 | 0.99 | 1.39 | 1 | 5 | 2 | 0 | 100% | 1 |
| 4IDO_GDP_A_501 | 95% | 43% | 0.083 | 0.986 | 1 | 1.26 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6B9F_GDP_A_506 | 93% | 41% | 0.092 | 0.989 | 1.02 | 1.33 | 1 | 4 | 1 | 0 | 100% | 1 |
| 7OL3_GDP_A_501 | 93% | 25% | 0.088 | 0.983 | 1.14 | 2.02 | 2 | 9 | 0 | 0 | 100% | 1 |
| 4IDQ_GDP_D_501 | 90% | 41% | 0.099 | 0.984 | 1 | 1.34 | 1 | 5 | 1 | 0 | 100% | 1 |
| 6B9D_GDP_B_501 | 87% | 44% | 0.095 | 0.968 | 0.86 | 1.35 | - | 6 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 19% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
| 5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
| 2PHN_GDP_A_2696 | 100% | 45% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
