UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3O3C designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3O3C_UDP_A_901 | 28% | 34% | 0.273 | 0.928 | 1.09 | 1.62 | 2 | 6 | 2 | 0 | 100% | 1 |
| 3O3C_UDP_C_901 | 27% | 34% | 0.261 | 0.908 | 0.95 | 1.76 | 1 | 7 | 4 | 0 | 100% | 1 |
| 3O3C_UDP_B_901 | 24% | 34% | 0.279 | 0.913 | 1.01 | 1.7 | - | 6 | 2 | 0 | 100% | 1 |
| 3O3C_UDP_D_901 | 24% | 34% | 0.29 | 0.923 | 0.94 | 1.76 | - | 7 | 3 | 0 | 100% | 1 |
| 4KQM_UDP_D_801 | 80% | 36% | 0.125 | 0.976 | 0.92 | 1.69 | 1 | 6 | 0 | 0 | 100% | 1 |
| 5UW0_UDP_D_801 | 67% | 35% | 0.134 | 0.943 | 1.01 | 1.64 | 2 | 6 | 0 | 0 | 100% | 1 |
| 5UW4_UDP_C_802 | 65% | 41% | 0.161 | 0.963 | 0.96 | 1.36 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5VNC_UDP_D_801 | 58% | 35% | 0.145 | 0.925 | 1.1 | 1.56 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5SUL_UDP_A_801 | 53% | 32% | 0.18 | 0.944 | 0.99 | 1.81 | 1 | 7 | 1 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 43% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
| 2B69_UDP_A_900 | 100% | 47% | 0.046 | 0.992 | 1.19 | 0.9 | 2 | 1 | 0 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 20% | 0.046 | 0.991 | 2.39 | 1.19 | 4 | 3 | 0 | 0 | 100% | 1 |
| 5GY7_UDP_B_401 | 99% | 45% | 0.047 | 0.987 | 0.98 | 1.18 | 1 | 5 | 0 | 0 | 100% | 1 |
| 3U2V_UDP_B_270 | 99% | 35% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |
