Ligand validation:2DGK

PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 2DGK designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2DGK_PLP_A_1500	77%	42%	0.132	0.973	1.07	1.23	1	3	1	0	100%	0.9375
2DGK_PLP_B_1501	76%	45%	0.123	0.961	0.89	1.25	1	3	1	0	100%	0.9375
2DGK_PLP_C_1502	75%	44%	0.132	0.967	0.97	1.25	1	4	1	0	100%	0.9375
2DGK_PLP_D_1503	75%	43%	0.143	0.976	1	1.23	1	3	1	0	100%	0.9375
2DGK_PLP_E_1504	69%	42%	0.142	0.959	1.07	1.23	1	4	1	0	100%	0.9375
2DGK_PLP_F_1505	65%	40%	0.147	0.949	1.21	1.19	2	3	1	0	100%	0.9375
1XEY_PLP_A_500	98%	22%	0.062	0.988	1.71	1.7	3	5	2	0	100%	0.9375
1PMM_PLP_B_500	93%	43%	0.077	0.971	0.77	1.49	-	6	1	0	100%	0.9375
2DGL_PLP_B_500	76%	41%	0.145	0.983	1.02	1.34	-	5	0	0	100%	0.9375
2DGM_PLP_E_502	74%	40%	0.125	0.957	0.93	1.48	-	6	1	0	100%	0.9375
2BIE_PLP_B_1361	100%	32%	0.039	0.989	1.43	1.39	4	3	1	0	100%	0.9375
4NOG_PLP_A_501	100%	40%	0.042	0.992	1.24	1.18	3	1	0	0	100%	1
3WQC_PLP_B_402	100%	23%	0.045	0.993	1.94	1.38	4	4	0	0	100%	0.9375
4HT3_PLP_B_401	100%	17%	0.045	0.993	2.04	1.72	3	5	0	0	100%	0.9375
1JF9_PLP_A_500	100%	14%	0.047	0.994	1.28	2.78	1	11	0	0	100%	0.9375

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.