8AF2

Human Sterol Carrier Protein with unnatural amino acid 2,2'-bipyridine alanine incorporated at position 111


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP281well solution 2.3M ammonium sulphate, 100 mM citric acid pH 5.6 and 200 mM NaCl
Crystal Properties
Matthews coefficientSolvent content
35.13

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.512α = 90
b = 50.523β = 90.732
c = 62.211γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray81PIXELDECTRIS EIGER X 16M2020-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9795DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5162.2199.40.1820.9966.65.2737747.02
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.5142.55899.50.3521.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1IKT2.5162.211.34736533399.250.23660.23380.299748.14
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d11.1941
f_angle_d0.7271
f_chiral_restr0.0409
f_bond_d0.0034
f_plane_restr0.0023
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1944
Nucleic Acid Atoms
Solvent Atoms21
Heterogen Atoms87

Software

Software
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
autoPROCdata reduction
xia2data scaling
PHASERphasing