8A5M

TRIM7 PRYSPRY in complex with a MNV1-NS6 peptide LEALEFQ

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5	291.15	1 M Sodium Potassium Phosphate pH 5

Crystal Properties
Matthews coefficient	Solvent content
2.82	56.38

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 40.919	α = 90
b = 112.972	β = 102.928
c = 53.036	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	80	PIXEL	DECTRIS EIGER2 XE 16M		2022-04-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.9795	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.918	112.97	99.9	0.96	24.4	3.5		10246

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.92	3.1			0.33

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7OW2	2.918	56.55	10224	524	99.873	0.197	0.1931	0.2746	54.013

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-3.679		-2.008	1.848		2.491

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.156
r_dihedral_angle_4_deg	20.859
r_dihedral_angle_3_deg	19.318
r_lrange_it	9.702
r_lrange_other	9.701
r_dihedral_angle_1_deg	8.98
r_scangle_it	6.571
r_scangle_other	6.547
r_mcangle_it	5.992
r_mcangle_other	5.991
r_scbond_it	4.127
r_scbond_other	4.077
r_mcbond_it	3.661
r_mcbond_other	3.661
r_angle_refined_deg	1.537
r_angle_other_deg	1.166
r_nbd_other	0.236
r_symmetry_nbd_refined	0.211
r_symmetry_nbd_other	0.197
r_nbd_refined	0.185
r_nbtor_refined	0.165
r_xyhbond_nbd_refined	0.144
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.055
r_symmetry_xyhbond_nbd_refined	0.055
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2809
Nucleic Acid Atoms
Solvent Atoms	24
Heterogen Atoms	15

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing