7Z6T

Aspergillus clavatus M36 protease without the propeptide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.52930.1 M HEPES pH 7.5, 0.2 M lithium sulfate, 25% PEG3350
Crystal Properties
Matthews coefficientSolvent content
2.7755.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.826α = 90
b = 85.037β = 111.303
c = 55.319γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2021-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX IV BEAMLINE BioMAX0.9762MAX IVBioMAX

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5145.0498.720.812.256.371273
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.511.5640.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE4k901.5145.0471273352397.1310.1780.17750.19622.884
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.640.747-1.571-0.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.608
r_dihedral_angle_4_deg19.682
r_dihedral_angle_3_deg13.669
r_lrange_it7.393
r_dihedral_angle_1_deg6.19
r_scangle_it4.143
r_scbond_it3.033
r_mcangle_it2.359
r_angle_refined_deg1.701
r_mcbond_it1.577
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.608
r_dihedral_angle_4_deg19.682
r_dihedral_angle_3_deg13.669
r_lrange_it7.393
r_dihedral_angle_1_deg6.19
r_scangle_it4.143
r_scbond_it3.033
r_mcangle_it2.359
r_angle_refined_deg1.701
r_mcbond_it1.577
r_nbtor_refined0.321
r_symmetry_nbd_refined0.236
r_symmetry_xyhbond_nbd_refined0.228
r_nbd_refined0.212
r_xyhbond_nbd_refined0.207
r_chiral_restr0.109
r_symmetry_metal_ion_refined0.097
r_bond_refined_d0.013
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2994
Nucleic Acid Atoms
Solvent Atoms449
Heterogen Atoms186

Software

Software
Software NamePurpose
REFMACrefinement
PHENIXrefinement
MxCuBEdata collection
XDSdata reduction
XDSdata scaling
Cootmodel building
PHASERphasing