X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52770.1 M Tris, pH 8.5, 0.2 MNaCl, 25% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.652.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 58.815α = 90
b = 129.918β = 90
c = 161.304γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152015-10-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.9793SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1975099.40.1150.99314.366.9563387
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.3397.70.2460.9326.14

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE6AAV2.19734.2863387324599.540.2210.21830.273822.332
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.541.013-0.473
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.24
r_dihedral_angle_4_deg17.811
r_dihedral_angle_3_deg14.672
r_dihedral_angle_1_deg7.507
r_lrange_it4.599
r_lrange_other4.403
r_mcangle_it2.414
r_mcangle_other2.414
r_scangle_it2.111
r_scangle_other2.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.24
r_dihedral_angle_4_deg17.811
r_dihedral_angle_3_deg14.672
r_dihedral_angle_1_deg7.507
r_lrange_it4.599
r_lrange_other4.403
r_mcangle_it2.414
r_mcangle_other2.414
r_scangle_it2.111
r_scangle_other2.11
r_mcbond_it1.528
r_mcbond_other1.528
r_angle_other_deg1.38
r_angle_refined_deg1.377
r_scbond_it1.338
r_scbond_other1.338
r_xyhbond_nbd_refined0.243
r_nbd_refined0.203
r_symmetry_nbd_other0.199
r_nbtor_refined0.173
r_symmetry_xyhbond_nbd_refined0.149
r_symmetry_nbd_refined0.136
r_nbd_other0.125
r_symmetry_xyhbond_nbd_other0.088
r_symmetry_nbtor_other0.076
r_chiral_restr0.07
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8222
Nucleic Acid Atoms
Solvent Atoms770
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing