7S50

Serial Macromolecular Crystallography at ALBA Synchrotron Light Source - Phycocyanin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE27775 mM HEPES pH 7.0, 20 mM MgCl2, 9% PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.9358.07

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 188.5α = 90
b = 188.5β = 90
c = 61γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS 6M2018-09-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.97918ALBAXALOC

Serial Crystallography

Sample delivery method
Diffraction IDDescriptionSample Delivery Method
1LCP Injectioninjection
Injection
Diffraction IDDescriptionFlow RateInjector DiameterInjection PowerInjector NozzleFilter SizeCarrier Solvent
1
Data Reduction
Diffraction IDFrames IndexedCrystal HitsTotal Frames
1753533

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.148.81000.996812.630232405942.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.171000.04580.6712

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5UVK2.143.4222830118599.220.306840.304740.34685RANDOM53.334
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.25-0.13-0.250.82
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.709
r_dihedral_angle_3_deg13.055
r_dihedral_angle_4_deg12.835
r_dihedral_angle_1_deg4.092
r_long_range_B_refined2.59
r_long_range_B_other2.438
r_angle_other_deg0.912
r_angle_refined_deg0.839
r_mcangle_it0.83
r_mcangle_other0.829
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.709
r_dihedral_angle_3_deg13.055
r_dihedral_angle_4_deg12.835
r_dihedral_angle_1_deg4.092
r_long_range_B_refined2.59
r_long_range_B_other2.438
r_angle_other_deg0.912
r_angle_refined_deg0.839
r_mcangle_it0.83
r_mcangle_other0.829
r_scangle_other0.604
r_mcbond_it0.483
r_mcbond_other0.483
r_scbond_it0.349
r_scbond_other0.349
r_chiral_restr0.039
r_bond_refined_d0.004
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2488
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms140

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata reduction
Aimlessdata scaling
MOLREPphasing