X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE6.729723% PEG 6K, 0.1 M NaCl, 50mM HEPES pH 6.7
Crystal Properties
Matthews coefficientSolvent content
2.957.54

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 108.119α = 90
b = 108.119β = 90
c = 137.142γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDOXFORD TITAN CCD2015-11-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I020.987DiamondI02

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1793.6499.70.1030.99712.66.447982
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.290.963

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2IWG2.1793.6344910234698.490.20950.20760.2475RANDOM40.283
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.410.20.41-1.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.678
r_dihedral_angle_4_deg13.349
r_dihedral_angle_3_deg11.601
r_dihedral_angle_1_deg7.758
r_angle_refined_deg1.397
r_angle_other_deg1.246
r_chiral_restr0.068
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.678
r_dihedral_angle_4_deg13.349
r_dihedral_angle_3_deg11.601
r_dihedral_angle_1_deg7.758
r_angle_refined_deg1.397
r_angle_other_deg1.246
r_chiral_restr0.068
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5611
Nucleic Acid Atoms
Solvent Atoms136
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
ADDREFdata reduction
Aimlessdata scaling
PHASERphasing