7BEW

Glyceraldehyde 3-phosphate dehydrogenase from Campylobacter jejeuni - NAD(P) complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.5295PEG 4000 (20%), 0.3 M Na/K tartrate, 01.M Na Acetate
Crystal Properties
Matthews coefficientSolvent content
3.2161.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.81α = 90
b = 90.81β = 90
c = 224.8γ = 90
Symmetry
Space GroupI 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2014-12-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2564.2199.90.1510.66.522791
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.351000.732.56.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISFREE R-VALUE2.2557.79722778117399.8030.1660.16320.211824.316
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.013-0.0130.025
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.976
r_dihedral_angle_3_deg16.101
r_dihedral_angle_4_deg14.677
r_dihedral_angle_1_deg8.145
r_lrange_it6.658
r_lrange_other6.554
r_scangle_it4.874
r_scangle_other4.873
r_scbond_it3.088
r_scbond_other3.087
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.976
r_dihedral_angle_3_deg16.101
r_dihedral_angle_4_deg14.677
r_dihedral_angle_1_deg8.145
r_lrange_it6.658
r_lrange_other6.554
r_scangle_it4.874
r_scangle_other4.873
r_scbond_it3.088
r_scbond_other3.087
r_mcangle_it3.049
r_mcangle_other3.048
r_mcbond_it2.008
r_mcbond_other2
r_angle_refined_deg1.674
r_angle_other_deg1.355
r_xyhbond_nbd_refined0.65
r_symmetry_nbd_refined0.212
r_nbd_refined0.204
r_symmetry_nbd_other0.18
r_nbd_other0.176
r_nbtor_refined0.159
r_symmetry_xyhbond_nbd_refined0.143
r_symmetry_nbtor_other0.081
r_chiral_restr0.077
r_metal_ion_refined0.038
r_bond_refined_d0.01
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2524
Nucleic Acid Atoms
Solvent Atoms164
Heterogen Atoms57

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
SCALAdata scaling
REFMACphasing