6RN5

PptA from Streptomyces chartreusis

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	295	100 mM MES/HCl pH 6.5, 1.6 M MgSO4

Crystal Properties
Matthews coefficient	Solvent content
2.4	48.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.303	α = 90
b = 132.233	β = 90
c = 116.398	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2014-08-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	BESSY BEAMLINE 14.1	0.905002	BESSY	14.1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.037	46.196	98.9	0.106	0.106	0.111	0.999	19.2	12.3		24547			38.1

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.037	2.16	94.5		0.916	0.916	0.971	0.711	2.26	8.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	2.037	46.196	24546	1228	98.944	0.193	0.193	0.191	0.237	Random selection	43.16

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.127			-2.613		-2.515

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.157
r_dihedral_angle_4_deg	17.948
r_dihedral_angle_3_deg	13.86
r_lrange_it	8.252
r_lrange_other	8.249
r_scangle_other	6.471
r_scangle_it	6.456
r_dihedral_angle_1_deg	5.552
r_mcangle_it	4.821
r_mcangle_other	4.82
r_scbond_it	4.205
r_scbond_other	4.202
r_mcbond_it	3.243
r_mcbond_other	3.239
r_angle_refined_deg	1.532
r_angle_other_deg	0.816
r_nbd_refined	0.229
r_metal_ion_refined	0.184
r_nbtor_refined	0.18
r_xyhbond_nbd_refined	0.175
r_symmetry_nbd_other	0.159
r_nbd_other	0.136
r_symmetry_nbtor_other	0.083
r_chiral_restr	0.08
r_symmetry_xyhbond_nbd_refined	0.079
r_symmetry_nbd_refined	0.076
r_symmetry_xyhbond_nbd_other	0.055
r_bond_refined_d	0.014
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2155
Nucleic Acid Atoms
Solvent Atoms	134
Heterogen Atoms	28

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XDS	data scaling
PHASER	phasing