X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2M (NH4)2SO4, 0.1M BIS-TRIS pH=5.5, 25% PEG 3350, 1.7mM MnCl2
Crystal Properties
Matthews coefficientSolvent content
1.9135.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.445α = 90
b = 94.117β = 90
c = 53.073γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-09-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.976247ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.447.0699.90.0360.99921.47.218410
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4298.30.6391.26.6858

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3W5X1.447.061749489899.860.159750.158440.18536RANDOM26.97
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.260.54-1.8
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.297
r_sphericity_free28.102
r_dihedral_angle_4_deg15.795
r_dihedral_angle_3_deg13.04
r_sphericity_bonded12.399
r_dihedral_angle_1_deg5.955
r_long_range_B_refined3.761
r_long_range_B_other3.758
r_scangle_other3.089
r_rigid_bond_restr2.627
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.297
r_sphericity_free28.102
r_dihedral_angle_4_deg15.795
r_dihedral_angle_3_deg13.04
r_sphericity_bonded12.399
r_dihedral_angle_1_deg5.955
r_long_range_B_refined3.761
r_long_range_B_other3.758
r_scangle_other3.089
r_rigid_bond_restr2.627
r_scbond_it2.566
r_scbond_other2.528
r_mcangle_it2.239
r_mcangle_other2.239
r_mcbond_it2.003
r_mcbond_other1.975
r_angle_refined_deg1.658
r_angle_other_deg0.964
r_chiral_restr0.103
r_bond_refined_d0.014
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms620
Nucleic Acid Atoms
Solvent Atoms59
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing