5M0I

Crystal structure of the nuclear complex with She2p and the ASH1 mRNA E3-localization element


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP277100 mM Bis Tris propane, pH 6.5, 200 mM NaF, 20 % (w/v) PEG 3350,
Crystal Properties
Matthews coefficientSolvent content
2.7254.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 220.52α = 90
b = 58.34β = 126.98
c = 146.01γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M-F2015-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.0716ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4110090.10.06810.371.949733
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.412.47910.4382.131.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1XLY2.4150.0149733257190.360.191750.189460.23458RANDOM62.211
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.671.52-1.390.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.834
r_dihedral_angle_4_deg22.592
r_dihedral_angle_3_deg15.59
r_long_range_B_refined7.762
r_long_range_B_other7.762
r_dihedral_angle_1_deg6.968
r_scangle_other4.857
r_mcangle_it4.834
r_mcangle_other4.834
r_mcbond_it3.075
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.834
r_dihedral_angle_4_deg22.592
r_dihedral_angle_3_deg15.59
r_long_range_B_refined7.762
r_long_range_B_other7.762
r_dihedral_angle_1_deg6.968
r_scangle_other4.857
r_mcangle_it4.834
r_mcangle_other4.834
r_mcbond_it3.075
r_scbond_it3.066
r_scbond_other3.066
r_mcbond_other3.042
r_angle_refined_deg1.881
r_angle_other_deg1.716
r_chiral_restr0.113
r_bond_refined_d0.018
r_gen_planes_refined0.013
r_bond_other_d0.011
r_gen_planes_other0.01
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7731
Nucleic Acid Atoms1192
Solvent Atoms333
Heterogen Atoms74

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing