5HX2
In vitro assembled star-shaped hubless T4 baseplate
ELECTRON MICROSCOPY
Sample |
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In vitro assembled hubless T4 baseplate |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Vitrification Instrument | GATAN CRYOPLUNGE 3 |
Cryogen Name | ETHANE |
Sample Vitrification Details | Plunged into liquid ethane (GATAN CRYOPLUNGE 3). |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 45607 |
Reported Resolution (Å) | 3.8 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C6 |
Map-Model Fitting and Refinement | |||||
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Id | 1 (3H2T, 1N80, 2FKK) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | AB INITIO MODEL | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 35 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 500 |
Maximum Defocus (nm) | 3500 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 22500 |
Calibrated Magnification | 38168 |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | EMAN | 2.1 |
IMAGE ACQUISITION | Leginon | 3.1 |
CTF CORRECTION | CTFFIND | 3 |
MODEL FITTING | Coot | 0.8.1 |
INITIAL EULER ASSIGNMENT | RELION | 1.3 |
FINAL EULER ASSIGNMENT | jspr | |
CLASSIFICATION | RELION | 1.3 |
RECONSTRUCTION | jspr | |
MODEL REFINEMENT | PHENIX | 1.10.1 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 69920 |